tdrd6


Basic Information

Item Value
gene id tdrd6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2189759 ~ 2212201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946983.2
GTTTACATTTGCTACTTTGATTGTTTCTTTAAACTTCATAAAACATAGCAAATAAATGAATCCGTAAGTAATCAGTAGCTGTTAGTTTTCACAAAATGGCGGAAGGAGGGGCTTCAAATGAGAGGCGCCAAGGAAGGCTTTAGTTTAGCATCTTCTAGCTGAGCAACACAACTTAATACAAAACAAGTAACGCTAAGCTGTGCTTTAACTAGCGATTAATCCTTTACACTAACTAGTCCTGTATATTCTCAGAGGCATTAGTGGAAAATAACGGAAGTGTTTAGGCTGTAAATTGAGAGCTAGTAAACGGGTGATAGCTGGCGCTTCTGTAGAGAAGACCTGAGAGGTGAAGTCCTGAATCCTGTAGCCAGTTCTGGAGCAATGGATATGACTAAGTACCATGTCATCAGTCATTGAAAATTTCTTGAATTATTTGAAAATCTGAAACCTGGAAAACGGCACAATGTGTTCAATTCCTGGGCTCCCGTCACCTGGCTCAACTGTAACTGTGTTCATTACCAGAGTAAACGTGAACCCTCTCTGTGTTCTAGTAGAGTTTTGGGGTAATTTTGTCCAGGATCAGAAACTTGCATATcaacaaaaaaaagagatTCAGTACCCCAAAGAAGTATTTCATGAAGGAGAAGGCAAGCCTGGTGACCTGTGTCTTGTACGGGTCTATGAAACGTGGTACAGAGGCCGTATAGTGTCAAGGAATGATACTTACTACAGCGTGTTCCTTATTGATGAAGGCAGAACACTTCGGGCTCATACCAGCCTTTTGGCGTGGGGCCAAACTGACTTTTTCAACCTGCCTCCTGAAGTTGAATTTTGCATTCTTTCCAATGTCCTGCCATTGTCTACTGAAAATAGATGGTCAAAATTGGCCTTGGGGTTCATGAAATCATTCTGTGGGAGATCAGTTACTGCCTGTGTTCTGGATTTTGCCATACCCCAGCGTGCATTTCTGCTTGATATTCCATGTCTGTCTAGGCAAATGCATGAGATGGGATTTGCAAAGAAATTGTCAAGTGAGGAATTCAAAGACTTTGTTTCAAGATCTTTACAGTCTGATGCTGGTTCTGTAGACCTGTTGAGGACTGCATCCATGGGATTTGAACCACTTGTACAAATCAAGAAACAGCAGTGTTACATGTATCCAGAGCTACAAGCTGAAACCACTGAGACTGTACTAGTCACAGAGGTAAACAATCCCCTGCGTGTCTTCTGTCAGCTAAAGGTTTTCTCCCAGGAACTCAAGAAACTGACAGAGCAGATAACTAAGCATTATGAAAGAACAATTGGATCTCATTTTGCAAGACCTGAGAATTTGGGGGCTCCTTGTGCATCAAGAGGAACTGATGGAAAGTGGTATCGCTCTGTTTTGCAGCAGGTCATGTCCACCAACAATGTAGTTGAGGTGCTACATGTGGATTATGGGAAGAAACAATTTGTTCAAGTAGATCATGTTAGACCACTGGCCCCAGAATTCTTTCGAATGCCTGTTGTGACTTATGTTTGCTCTCTTCATGGAGTTATTGATCGAGGTGTTGGTTGGACAGTTTCACAGATTGATTATCTGAAATCTTTACTGCTCAACAGAACGGTTATTGCCAGATTTGAGTATCAGAGCCTCTCAGAGGGCGTCCACTATGTCACACTCTATGGAGATGAAAACactaatataaacaaattatttggctCAAGAGAGAAGTGCTTAATGGATTCAAGGTGCCTTAAAGATTATACCGTGCATAAGATGGGAACACGTCAGAGGTGCCAGATTTCAGTTAAAGGTGAGACACAAGGAACTGAGGATTTGAAAGGGATTTTTACAGAAAGTCTGTCACCTAATACTGAGCATGTGGCTGTTGTGCAGCATGTTGATAGCCCCTCAAAGTTTTGGATCCAGACACAGAAATATGCTGCTGAGTTTGATCTGCTAATGAATGGCCTGACAGAGCTGTATAGTGATCAGACCAGAACCAGTGGAGTGATTAGAAAGCCTGTAGCTGGTCTTCTTTGTGTGGCCAAAGCTCAAGATGATGTATTCTATAGGGCTACTATTTGTGAAGTCATTGAGTCCAAGGCAGAGGTTTTCTTCCTGGACTATGGAAACAAAGAATTGGTTGATTGTAGCAACCTTTGTGAGTTGCCCCTCAGGTATCAAAACCTACCAGCCTTGGCAATTAAGTGTGCTCTTTATGGCATTCAACCCGGAAGTGAAGAATGGGATCTAAATGCCACATTATTCTTTGCTAAAGCTGTTGTGGACAAAGTCCTTGATGTACGTATACTTGCAAAGTCCGAAGACACACATCTTGTCCAGGTCATTGATTCAATGTCAGATGGAGAAAAAGATTTTTCAAAGCTGCTCTGTAATGCAGGTTTTGCAGACTTTGAAGCTATGGATAAACCTATGGTCGCACCATACACTAAAGTGGTACAGACTTCTGACGTGTTCAAGACAGGTGCTGTTTCACAGTCATCCAGTTCACCTGCGGTAACAGCTGCTTTCAAGGAGTACTTGTTTCCAATTGGAAGCTCATTTGATGTTACAGTATCCTACATCGAGAGTCCAAATGACTTTTGGTGTCAGAAAACTACTGATGCAAAATGCCTGAAACTGCTAATGCAGGATCTCCAGAGGTACTATGCAAACTCTGAATTTCAGCCTCCTTTGGAAGCTGCCTGTGTTGCCCGTCATCCTGAAAATAGAATGTGGTCTCGAGCTTTGGTGATCCAAAAGCACCAGGCTTCTAACGTAACTGTACTGTTTGTTGATTATGGGGAAACAAAGAGAGTTCCCATTCATGACCTTCGCCGCATTGATCCAGAATTCCTTAAGCTGAAAGGACAAGCTTTCCGATGCTGCTTGTATAACTTGAGCTATCCGGTCTCTCATTCCCCTTTAGTCTGGAGTCCTGATGCTACGTTGCAGTTTCGAGAGTTTGTGGACAAGGCAGCCTCAATGAGTGTCATGTTgaagtgtactgtatatgctgtGATGTGTGACACTCAGAAAGTGATTTTCAATGTAGTGGATTTGGAGAGTCCGTTCCAAAGCCTCTGCAGACTTCTTGTCCAGAGAGGTCTGGCCGACAGTGCATCTAAAATGGTAGCTCTGCCACCTTTAAGGCTGGATACATACTACTACTCTTCACACAGCATCAAAACTGGGTCTGAAGAAGATGTATGCATCacttatgtgaaaaatgtcaacCAGTTCTTTTGTCATCTGCAAAGAAATTCTGTGCAGATTGAGGAACTTGCAGATAAAGTCAACAGGTTATGTGGTCAGCTACAGAGAATTAACTGTCCAAAAACCTTTGGAAATGTTTGCTTTGCAAAATATACTGACGGGCTGTGGTACAGGGGACAGTTTAAATCTGTAAAGCCTCCAGTTGTAGTCCACTTTGTGGATTATGGCGACACACAGCAAGTTGAGAAATCAGACCTCCTACCAGTTCCAGTTGAAGCTGCTGAGATTATGGCAATACCTGTGCAAGCAGTTGAGTGTGGGCTTTCTGATGTGCCTGAAAAGGTtccaggtgaagtgaataattgGTTTGAAAGTTTTGTGATGGATCGCAAGCTGAAAGCATTGATAGTAGCCAAAGAACCAACTGGTAAATTAATTGTTGAGCTGTATGATGGGAAAACTCCAGTAAATGCAATAATAAGAGAGAAATTTCACATTGAAGTTGAGAGAAATGAGCAAATTACTGTAAAAGAATTTGATGTTATGGATCAATATCGGTCATATAGTGTGCCTGAAAGACAAAAAGTACCGCAATGGACTCCTGAAAAACACTGGAGATCTCAGAAAAGTGCTGATTCGGAAGAAAGCTCAGGAAGATTTCTTGATGGGGACATGAAGAGAGACATCACCGCAATAAAGTTGAAGCAACATGTTTTTCACAGAGATTCTCATAGTgaatctgaaaatgaaaaaccaaGTGTCCTTAAACAAGCAGAGCTCCCTGTAAAAGTAGTCGAACCAGGTCTGGAAGCTGAAGTTTTCATCTCGCATTGCAATAGTCCTTTGAGTTTCTTTGTCCAATTGGTAACAGATGAAAGTGATATTTGGTCTCTGGTGGAAAAGTTGAATGATGGTCAGTCGGAGCATGTACCTGTTAACTCTGGTGACCTCCGTGAAGGTGACTTGGTTAGTGCAGAGTACCCTGATGATAACTGTTGGTACCGCGCAGTTGTAAGAAAAGCGCCGGTCAGTGACACGGCTGATGTAGAATTCATTGACTTCGGAAATACTGCTGAAGTTTCGGTCTCAAAAATATGCATTCTGGACAAAATGTTCTCCCAACCAAGGTATAGCATTCATTGCTCACTGATTGGAGTGGAAAATGTTGACTGTGATGTGGCCTctaatttaaaaactgaaatggaaaagaaTGCGGATGggtttttatgtaaatttatccAGCAGGCAGGTTCTGTATGGGAGGTCAAACTTGAGGTCAATGGTAAGCTGTTGGGATCTGCTCTCTCCAAAGATGCAAGCAACATAACTGTAACAGCTGCACCCAAGAGCCCAGATACTAACTTCAATCTGTGTACTTATAAAAATCCTGATATACCGACTGGACAGGTAATTGCTGTATATGCCTCAGTCATTATTGGGCCACAGCTCTTCTGGTGTCAGTATGCAGAGACAGAAAAGCTGCAGGAGATTTCTGATATAATCCAAAAGATTGGTAGTAATTTGGAAAGCGGGGCTTTGAATGTAGAAACCCTACAAATTGGAAGTGGATGCATTGCCCTTTTCGATGAGGACCAACTGTGGTATCGTGCAAAGGTGACCTCAGTTGAAAAGGACACACTCTCTGTTCTATTTGTTGACTATGGAAATGAATCAAAAGTTAAAATGAGTGATGTTAGACCACTGCCATTTGAGGTGTCTGATTTGCCTCCTCAGGCATTTGCCTGTCAGCttgatggttttaatgttttggaggGGTCTTGGGACGACAAGGCAGCTGATCAGTTCTTTGAGCTAATCAATGACCATCTCTTGAAAGTCACAATTTTGAAGTTAGCCAGTTCATGTGATATGGTGACTCCGCATTTTGTTAAATTGGAATGTGAGGAAATTATTATCAATGATGCAGTGAAAAAATGTTGGACTCAAAATAGCAAGAGGACATCATTTGAACTAGCAAATGCACCGTCTGCGACACTCTTGGATTCAACTACTGTGACTGAAACGTCCTCTCTCTGTGTAAGTGAACCTGTAGTAAGACCCAAGGACCCCCTTTGTGCCATGGAGTATCTGCGCAATGGCACTTGCATTTCTCCACTCAGAATGCAGGTAGAATGCGATAGCACTCTGGCTGAGCATGAGGAGCAAGCTGGATCCACAGAGTTGCTGGATAAAAGAAATGTTGCTGTGGGCATGATATTTTCTCAAGATGATGATCACGATTTGACTTCAGCAGGCATTGAAAAGACTGAGAATTATGGGAAAAGTGTTGGTGTGAAGGATACGAATGTAAATGTGGATATTTCAGACATTCATTCCAATCAACCTGTGGATGTTCTCGGAGAATGCCAGTTAGACTCCACAGACTTTATGAGTAAAGGAGCATTCACAGGTTCTCTGGAGTATACTGATGAGAACGAAGTGGTGGAAACTGCAGAAACTGCATCTCCAGAAGTTCCGTCTTGTGACGAGGTCTGTGAAAAAGTGTACAGATCGGTTTCAGAACACGAAGAGCATGAGACTGAGTCTGATCATGAGATCATAAAATCAGACTTGGGAAACGTAAGGAGGGCTGCAGAGAGCAATGTAGTCGGGTCAGAATGTGTGATCTGGTCCCACGTACACAAGGGTTGGTGCCGAGCACAAACTTTAAAGATTTCTGATGATTCTACCTTGGTACTGCTTTTGGACCATGATTTTGTAATGAAAGTGGATCCAGTGAACATTTTTGAAATTGTACCAGAGGAATCATTGCAGGTTGAAAAGGAAATGGAGCATGAAGCTGTAACGTGTTTTGCTTCTCAAGATCCTTCTGTCATAGATCGTGATGAAGAGATTGATGAAGAACGTAGTGCTGGGATGGATCTAGTTGTCAGTGAGGAACAGGCTCAAGACAAAGAGCATGACTCCTGTTTAGGTGACTTGGTGGCAGAATCTGAAAAAACTTTACAAGTAGATTTGATTCAGTGTTTAGACCTTAACGCTCCTCAGGAAATGagTCAAATGTTTGTTGCAGATGTTTCACTTGAGCAAAGTGaacCAGCCATGGAGATGGATCTAAAACTAGAACTAGCACAGAATGCATGCGGTGCTTCGACGGTCCAGGAACAAACTGAGGAGACAAGTCCTCCAGCAGAGGAACAGAGAGTAGAAGATGTGATTAAGACGTGTGAGCAGGTAGATGAGCTGATGGATTTCATACCCGTGATACCACTGGAGAAGGACCAGGAGGCAGAATCTGAGGCTGAAACTCATGTGGAAACCTTCAGTGTAATGTCACAGGAGAAGGCTAAAGAAACTGAGCATGAAACTGTAGAACGTTTTTCCTCTCAAGAACCTACTGgcTTTAATGAAGAAATGGATGAACAGCCTAGTGGTGGGGTCGATCTCGTCATCATTGAGGAACAGGCTCAAGACAAAGAGCATGACTCCTATTCAGGTGACTTGGTGGCAGAATCTGAAAaaCCTGTCCAAGACGATGCAACTCAAGGTCCAGATTTAGGTCTTGATACTCCTCAGGAAATGAGCAAGAAGTTTGTTGCAGATGTTTCAGTTGAACAAAGTGaacCAGACATGGAAATGAATCCATCATTAGAAGTAGCACAAGATTTATGCTGTGCTGTGAAAGTCCAGGTACAACCTGCAGAAGATACTGAGGAGACGAGTCCTCCAGTAGAAGAACAAGGAGTAGAAGATGTGACTAAGATGTGTGAGCAGGTAGATGAGCTGATGGAGTTCATACCCATGATACCACTGGAGAAGGACCAGGAGGCAGAATCTGAGGCTGAAACTCATGTGGAAACCTTCAGTGTAATGTCACAGGAGAagGCTCTGGATGTGGAACTTGATGCCGATCCTGACTTGGTTGCCGTAATTGAAGTGATTGATGATGTTATTGCCTTTGTGAGTGAGAATGAACAGGGGTCGGATACAACATCAGACACGATTAAAGTCAGTATGGTGCAGACTGAATGTCTTGCTGCTGATACGGTGTCTTCTGACGTACAGCAACCATCTGATGCAGAGGAACTAAGAGCTTTAATGGTCACACATCTGTCCCTTAGAATTGAGGACACATCTGATGATGACATCATCTTTGTGAAAGAGTGGCAGGTTTCCGCAACCGAGACGATCGAGCCCACTAGTAAAGAGTAGCTGCGGCTTGATTAGGTGATTAAACGCACTGTTTTACTCTCAGTATCTCGGGTTACATTTTTGCCACTTGTTTATTCTGATCACTTTAGCACTTAAGCATCTAATTTCAGTGTTTTGAGTTCTGCCTGAAGTTTTCATTGTCTCTGAAAActagatttatttttccttttcattgttCTGTGTTCCTTGTTATTTAGACATATTGTTAAGAAGTGACATTAACGGATCAAATACATGACAGTTTTGTTTCATTGTCTCgggttgtttaaaaaatgttaagcTTGACAGTGCATGTGCTGCATGTTGagatgagaaaaataaagaaatacccTTTTGTTTA

Function

NR:

description
tudor domain-containing protein 6 isoform X1

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946983.2 True 7715 mRNA 0.42 28 2189759 2212201

Neighbor

gene id symbol gene type direction distance location
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 8603 2162431 ~ 2181156 (+)
adgrf3b adgrf1 coding upstream 31065 2151234 ~ 2158694 (+)
LOC117599673 NA coding upstream 58488 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 69842 2092475 ~ 2119917 (+)
si:dkey-1j5.4 LOC108257701 coding upstream 273899 1912614 ~ 1915860 (+)
fzd3a fzd3 coding downstream 123869 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 224497 2436698 ~ 2439040 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 242592 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 400000 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 428079 2640280 ~ 2644268 (+)
LOC117599781 NA non-coding upstream 38521 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 115878 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 118483 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 194080 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 254976 1934577 ~ 1934783 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 3376 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 113457 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 236221 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 294368 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 369108 2581309 ~ 2608373 (+)
LOC113546780 NA other upstream 47578 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 168496 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 829643 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 925127 1259176 ~ 1264632 (+)
G287892 NA other upstream 946087 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 272835 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1731293 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1775851 3988052 ~ 3988123 (+)
G289531 NA other downstream 1842256 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 2036129 4248330 ~ 4309929 (+)

Expression


Co-expression Network