anapc4 (anapc4,LOC107683992,LOC107665412)


Basic Information

Item Value
gene id anapc4
gene name anapc4,LOC107683992,LOC107665412
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3084649 ~ 3100761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946989.2
AGCGGTTCGTTGGTGGGTAAAGgagaattctgattggtcagcggTCACCGCGCGCACTGTTTCCAGGAAGTCTCACAGTAAAGAGCCAAAatattagaagaagaagaagcaaatgTCGGAGCAGCGGTTGTAATGGTTTAGTTAGGAGTGTGTACGCTCTCGTGCTGatgtgctgtgagtgtgagtgtgagctgACAGCACTAAAGACGGCTGCTAAAGACGGCTAATCTAGCTAGCAAGGAGCTACAGATAGAGCCATAAGGAAGGTTTCTGAGTTCTGAGGTTGCTCTGAGTCCAAAGTTTTGACGATGCGAGCTTTCCGACAAGTGGGAGAGAAGCAGCTCCCCAACCCTGTCCTCTACATGGCCTGGTCTCCAAAGAGGGATCTCATAGCCCTGGCCAACACTGCAGGCGAGCTTCTGCTGCATCGGCTTGCTAATTTTCAGCGTGTTTGGAGTTTAGCGCCCAACGAAAACACAGGAAAAGAGATCACTTCCTTGGCCTGGAGGCCTGATGGCAAAATCTTGGCGTTCAGTGTAGGCGACACCAAGCAGGTTGTCCTGTGTGATGCTGAGAAGGCGGAGATCCTCCACCTGTTTCCTGTCGACTGCCCTGTGTCCTGCATGCACTGGATGGAAGTGCAGAGTGACAGCAActcACTGTCTTCATCCACCGATTCGGAGGACGAGTCCAACCGTTTCCTCCCCAAGCTACCGACGTTACCCAAGAGCTACAGCTCATCGTCAAAGATATTTAGCGAAGAGAAATCTGATGAAGTCACTAACCTGCTGGGGGAAGTCAGGTTCAATATCCTGGTCGTAGGCGGGCCGTCTGGTTTTGTTGAACTTTATGCGTATGGCCTGTATAAGATAGCCACACTAAAAGGGATCACCGGAACTTGCCGTAGTCTCTGTCTGTCCAGTGACCTCAAATCTCTCTCAGTCATAACGGAAATAAGGTCCACAAACAGGAACTCTGAGATCCAGTACGTCCAGTTGGACACCGGACTGCTGTCCTCGTGTCTTCCAGAGCTAACGAGGATGGCccgcaaattcacacacatcTCCACCCTGATACAGTACCTGCGTCTGTCTCTCACCTGTATGTGCGAGGCCTGGGAGGACATCCTCATGCAGATGGATCTCCGCCTCACCAAATTCGTCCAGGAAAAGAATACAAGTACTCAGGTTCAAGATGAGTTCTTGGAGCTGTTGCTATGGGGACATGCCAGcccTGAATTGCAAGCTCTTCTCATGAACCAGCTGACAGTCAAAGGCTTGAAGATGTTGGGCCAGTCCATCGAGTCATCCTACTCGAGCATCCAGAAACTGGTTATCAGTCACTTACAGAGTGGTTCAGAAGCTTTGCTGTATCATCTGAGTGAGGTAAAAGGCATGGCTTTGTGGAAGCAGAAGTTTCAGCCTCTTGGTCTGGACCCTGCAGCTATAGAGGATGCCATCACAGCAGTAGGCTCCTTCACACTAAAGGCTAGCGAACTCTTACAagtgatTGATAAAAGTATGAAGAATTTTAAGGCCTTTTTCCGATGGCTCTACGTCGCAATGCttcgcatgtcagaagatcacgTCCCAGCCGAGCTAAATAAGATGACTCAGAAGGACTTGGCGTTTGTTGCTGATTTCCTGTCTGAGCATTTTAGTGCTAATGAGGAGCTGTTTGATCGGAAAGGGAAGTACTTCAACGTGGAACGAGTGGGACAGTATCtgaaagatgaagatgaagacttGGTGTCTCCCCCAAATATGGAAGGCAATCACTGGGTGACATTTGTTCAGCAGAGCACACACCTGAAAgagagccCACTGCTGTTTCCCACCTACCCTCAAAAGTCTCTGCACTTCGTGAAGAGGTTGATGGAGGGCTCCATTGACCTCTGTCTGCAAAAACCAGCAgaGGTGATAGGGAGTTCAGTGAAGCAGGCTGTGTGTTTGCGGCTGTACTCGGTGCCTGAGAGTTCTGAGAACACACCACGGCTGTTTGAGCTTCCGTCACTaTGGAATGATAAAAATGCTGGTATGCACTATGTAGTTTTCTGTATGCCAGAGATGTCAGCTTCCAAAATCTGCATCCTGAGGAGGGCATCAGACCCAAACAGcTCTGTCCAAAATGGCTTAGTAGCTGTCGACCTAAACACTCCTCTCAACACCAGTGTTGATGATGAAGCACCTGTACCTGAGCATTCTGATCGCTCCTATAGTTGCCTTGATGCCCGTCTCTATGACGACGAGACGCTGACTGTGGTGTTGCAAGCCCAAGAAGAGAACGAGAACAAGCTCCGCCTTCTGGCCCAGCTTCCTCTTGGCCCCGCCCTCAGCTGTGGGGAGGAGTTTAGCTGGGACCCTGCCTTCAGGTTGGACCAGCAGAGCGGTGAGATCCCTGTACGAGGGCTGATATGGGGAAATATGAGCCGGGATCTGGAGAACATGAAAGCCCAGTTTGTGGCTGTGAATGGCATCCGCAAAGTGTCCTGCGTGCTGAGTTCGAACCTGCGTCACGTCCGCGTGTTTGAGATGGACgtggaggacgaggaggaggaagagcgaGCTGATGAGTCACAAGATATCAGCTGTGACCAGGATGGACTGGTGGAAACATCGACGAATCGGGGAgcagatggagatggaggagaagTGGAGGCATGTGAGGAGATGGGCGACGGGTCAGGAAACATCTTGGAACAGACTTCAGGGTCAGATACACTATGACCTTTGACACTTTGTGCCCAAATCAGCCAAACACTGTACTTATAACAAATCAGCATCTGACAAGGTAATGACAGTTTAAggtcaaataaaacatttcatgtatatttgtaataaatgtacATCTTACTGAAATGCTGTGTTCACTTCTGAGAATAAAGTGATGTTTTTTTGAACATA

Function

symbol description
anapc4 Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to act upstream of or within cell division and regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4).

NR:

description
anaphase-promoting complex subunit 4 isoform X1

GO:

id name namespace
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG:

id description
K03351 APC4, ANAPC4; anaphase-promoting complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946989.2 True 2903 mRNA 0.49 28 3084649 3100761

Neighbor

gene id symbol gene type direction distance location
cbr4 cbr4,LOC107597475,LOC107665353 coding upstream 108404 2967201 ~ 2976245 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding upstream 128783 2951771 ~ 2955866 (+)
niban1a LOC108258050 coding upstream 135072 2931354 ~ 2949577 (+)
kifap3a kifap3,kifap3a coding upstream 158419 2902093 ~ 2926230 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding upstream 337585 2726388 ~ 2747064 (+)
slain2 slain2 coding downstream 633 3101394 ~ 3128120 (+)
slc10a4 slc10a4 coding downstream 34972 3135733 ~ 3141717 (+)
zar1 zar1 coding downstream 42122 3142883 ~ 3144734 (+)
ociad2 NA coding downstream 157412 3258173 ~ 3262050 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 163186 3263947 ~ 3277968 (+)
G288839 NA non-coding upstream 104444 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 167839 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 213983 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 319594 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 456331 2627758 ~ 2628318 (+)
G288927 NA non-coding downstream 91346 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 178645 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 240640 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 263467 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 263477 3364238 ~ 3369854 (+)
cnstb LOC108257742 other upstream 588597 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 942468 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1063386 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1724533 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1820017 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 842733 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 887291 3988052 ~ 3988123 (+)
G289531 NA other downstream 953696 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1147569 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1228071 4328832 ~ 4338299 (+)

Expression


Co-expression Network