stmn4 (stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074)


Basic Information

Item Value
gene id stmn4
gene name stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2612201 ~ 2618880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946998.2
TCATGCATTAGGAGTGGTAgtgctgctgatgctgctgaGCTCTTGTATCCGAGGACGTGCAGACTCCGAGAAAAAGCAGGAGAGAGGGGGACGACCATTATTAAGGAGAGGGGtggaaAGAGCAGATTAAGCCTCCTTACTACGTGAAGAAAGAAAACCAACAGTATGACCCTGGCAGCATATCGAGACAAACTGAAGGAGCTCCCTCTAGTGTCACTATTCTGCTCCTGCATCAAGACGGATGTTATAGACAAGCCGACCTACAAAGCTGAAGATGCAGTGGACCTGAACTGGTGTGAGATCAAGGACGTGGAAGTGATCGAGCTGAACAAGCGTGCATCAGGCCAGGCGTTTGAAGTGATCCTGAAGCCCCCTTCATTCGACGGTGTGCCCGAGCTGAATGCCTCCATGCCACACCGCAAGGACCCCTCACTGGAGGAGATCCAGAAGAAGCTGGAGGCTGCTGAGGAGAGACGGAAgTTCCAGGAGGCAGAGCTGCTGAAGCACCTGGCTGAGAAGAGAGAGCACGAGAGGGAGGTCATCCAGAAGGCCTTCGAGGAGAACAACAACTTCATCAAGAACGCAAAGGAGAAGCTGGAACAGAAGATGGAGATCAACAAAGAGAACCGCGAGGCCCTGCTGGCCGCCATGCTGGAGAGACTTCAGGAAAAGGACAAGCACGCAGAAGAAGTGAGGAAGAATAAAGAGTTGAAGGAGGAAGCATGCCGATAGAGTGGTGGAGGAAAAGAGGACTGTGTTTGggatggtttaaaaaaaacataggaTGAGACAGAGATCAATAAAAGAAGACATCACTTCTCATTATAGTAATGGAGGCGAGTAGTGGACATTGCTAATGGCaatttaaaacacaacaaacctttttttttttttttttttttttttttcatggggTATAAAATGTCAAAGCTAATAACTGTCTGGATAACAATGCAAGGTGCATCGAAGTTCTAGTGTCAAAGGTTCAGGTAGTAGATATCAGCAACCTTTTAGAAAATCAATCACTTGTACATATTGAGATGAGGATGTAGAAGATAGGAGAGAAACAagaaataaggaataaataatGCAGACATACAGACAATGCAGACTGAATACACTGAAAATTAAGATCAGTACTTTGAGGACAAGATATTGCACTTCATAAACGTCTATACACATTGCAAAAAATCTGCTTTTTCTTAAATGTATACCATCTAGCAAAGCGCAAGCTATGCATGTTTATTCacttatcatttatttattatagaggCACATGTGATTTctcaataaaacaaatttataaaGGAATTTATTCACATTGCCTTTGTTCTCTAAGCAGTATTGCATTCATGGTTATGCATTTTCATGAGATTTGATGAAAAAATATTAGAAGCTCCTAACTGTTAGCCTCTTCAGAATGAAATTCCTTACTGAATATTTAAGCACAATTCAAAGGCACATATAAGCTAAAcgatttttatttgtatcatgCTCAAGCGATAGCTAAGAAGAAAGATGTCAAGAGAATGGATCACAACATGTCAAGAATGCAGAGCAGGGACATAATGAGAAAACAGGGAAGACAGAGAAGaaggataaagagagagagagaattaagaaACACTGAGATGCTGTACTTATATTTTAATGAAGTGGCAATCAGAGAAGCTGCTTTAGCATTAGCTGTGAATGCTGTGATTTGTTTTGGCatgtctctgtgtttttcttgttaggtgactttttaaaatgacaatatgTGCAGTGATGAGCATTGATGTGATTTGTTCAGGAAACCCCATTTGCTCTTTTTGTGGTTGTCATAAAGATGATCCTATTTCTGGTTTGGCATGATGGTCAGTAAAAACATCTCTTTACTAAACGA
>XM_026946999.2
ttctttcttagtCGTTAATAATGTATGTGAtgcagcttgtgtgtgtatgtaaaagtCAATGCTGATGTTTATTAGTGAGTGAGGATGTTTGCTGTTGTACCTACTGATTGATATTTTATGGTCTAGGAAGAGCCTGATACTAACTACAGACTGACATCATGCCTGTGTGCCATTATGGCTGCAGAAGTCAATAGTTATGTAATACGTTTAAAGTGGGATTTACAGGGAGCAGTTGTGCTTCTTCTAACAATTATGCCCAATATTTCAATAACATCAGTGCATGCTATCCGGTAGAGATGGAagccagtatcagtatcaggcTGATACCAAGAAAACATGGTGGATTGGAtatcagatcctgtaacaaagGGCAAAGATTGAATCTGGATTCAATCTTTTTCGAGAGAGTGTGAAAGAATTTAACTCAGAGGCActtcagttgaaaaaaaaaaatatttaaatacattctaAAGCTTTAGGTGTTTAGtttgcaaagaaaacaacatcGGATGGGTATCGATATTGGCTCATACTTAAGGTTTCAGTGTCGTTACTGGTAtcagtaaaagaaaatgtggtaATGTGACATGTctagtgtttgtgctgttttgaCACTGTTAACCTCCAAGCGCAGCCGTGGCTCTTCTTGCCATTCCACTGACAAGCTGTAAATAAACAGCCACGTCTGCAGGAAGTGGATATTCATcagcattctgtgtgtgtgggaggttggacaagtggaaAGAGCAGATTAAGCCTCCTTACTACGTGAAGAAAGAAAACCAACAGTATGACCCTGGCAGCATATCGAGACAAACTGAAGGAGCTCCCTCTAGTGTCACTATTCTGCTCCTGCATCAAGACGGATGTTATAGACAAGCCGACCTACAAAGCTGAAGATGCAGTGGACCTGAACTGGTGTGAGATCAAGGACGTGGAAGTGATCGAGCTGAACAAGCGTGCATCAGGCCAGGCGTTTGAAGTGATCCTGAAGCCCCCTTCATTCGACGGTGTGCCCGAGCTGAATGCCTCCATGCCACACCGCAAGGACCCCTCACTGGAGGAGATCCAGAAGAAGCTGGAGGCTGCTGAGGAGAGACGGAAgTTCCAGGAGGCAGAGCTGCTGAAGCACCTGGCTGAGAAGAGAGAGCACGAGAGGGAGGTCATCCAGAAGGCCTTCGAGGAGAACAACAACTTCATCAAGAACGCAAAGGAGAAGCTGGAACAGAAGATGGAGATCAACAAAGAGAACCGCGAGGCCCTGCTGGCCGCCATGCTGGAGAGACTTCAGGAAAAGGACAAGCACGCAGAAGAAGTGAGGAAGAATAAAGAGTTGAAGGAGGAAGCATGCCGATAGAGTGGTGGAGGAAAAGAGGACTGTGTTTGggatggtttaaaaaaaacataggaTGAGACAGAGATCAATAAAAGAAGACATCACTTCTCATTATAGTAATGGAGGCGAGTAGTGGACATTGCTAATGGCaatttaaaacacaacaaacctttttttttttttttttttttttttttcatggggTATAAAATGTCAAAGCTAATAACTGTCTGGATAACAATGCAAGGTGCATCGAAGTTCTAGTGTCAAAGGTTCAGGTAGTAGATATCAGCAACCTTTTAGAAAATCAATCACTTGTACATATTGAGATGAGGATGTAGAAGATAGGAGAGAAACAagaaataaggaataaataatGCAGACATACAGACAATGCAGACTGAATACACTGAAAATTAAGATCAGTACTTTGAGGACAAGATATTGCACTTCATAAACGTCTATACACATTGCAAAAAATCTGCTTTTTCTTAAATGTATACCATCTAGCAAAGCGCAAGCTATGCATGTTTATTCacttatcatttatttattatagaggCACATGTGATTTctcaataaaacaaatttataaaGGAATTTATTCACATTGCCTTTGTTCTCTAAGCAGTATTGCATTCATGGTTATGCATTTTCATGAGATTTGATGAAAAAATATTAGAAGCTCCTAACTGTTAGCCTCTTCAGAATGAAATTCCTTACTGAATATTTAAGCACAATTCAAAGGCACATATAAGCTAAAcgatttttatttgtatcatgCTCAAGCGATAGCTAAGAAGAAAGATGTCAAGAGAATGGATCACAACATGTCAAGAATGCAGAGCAGGGACATAATGAGAAAACAGGGAAGACAGAGAAGaaggataaagagagagagagaattaagaaACACTGAGATGCTGTACTTATATTTTAATGAAGTGGCAATCAGAGAAGCTGCTTTAGCATTAGCTGTGAATGCTGTGATTTGTTTTGGCatgtctctgtgtttttcttgttaggtgactttttaaaatgacaatatgTGCAGTGATGAGCATTGATGTGATTTGTTCAGGAAACCCCATTTGCTCTTTTTGTGGTTGTCATAAAGATGATCCTATTTCTGGTTTGGCATGATGGTCAGTAAAAACATCTCTTTACTAAACGA
>XM_026947000.2
TGCACAGAACCAAAACAAACCGTCTAGTGACTTAGACTAGCTTTAACCTAAAGGTGTTctaatcttttaaaatgttcagtttCGACTGATTGAACAAAGACTTCGGCTCATGGACTGATTGTGCTGCATCACTAATGAAGATTATTCATTAATtggaaAGAGCAGATTAAGCCTCCTTACTACGTGAAGAAAGAAAACCAACAGTATGACCCTGGCAGCATATCGAGACAAACTGAAGGAGCTCCCTCTAGTGTCACTATTCTGCTCCTGCATCAAGACGGATGTTATAGACAAGCCGACCTACAAAGCTGAAGATGCAGTGGACCTGAACTGGTGTGAGATCAAGGACGTGGAAGTGATCGAGCTGAACAAGCGTGCATCAGGCCAGGCGTTTGAAGTGATCCTGAAGCCCCCTTCATTCGACGGTGTGCCCGAGCTGAATGCCTCCATGCCACACCGCAAGGACCCCTCACTGGAGGAGATCCAGAAGAAGCTGGAGGCTGCTGAGGAGAGACGGAAgTTCCAGGAGGCAGAGCTGCTGAAGCACCTGGCTGAGAAGAGAGAGCACGAGAGGGAGGTCATCCAGAAGGCCTTCGAGGAGAACAACAACTTCATCAAGAACGCAAAGGAGAAGCTGGAACAGAAGATGGAGATCAACAAAGAGAACCGCGAGGCCCTGCTGGCCGCCATGCTGGAGAGACTTCAGGAAAAGGACAAGCACGCAGAAGAAGTGAGGAAGAATAAAGAGTTGAAGGAGGAAGCATGCCGATAGAGTGGTGGAGGAAAAGAGGACTGTGTTTGggatggtttaaaaaaaacataggaTGAGACAGAGATCAATAAAAGAAGACATCACTTCTCATTATAGTAATGGAGGCGAGTAGTGGACATTGCTAATGGCaatttaaaacacaacaaacctttttttttttttttttttttttttttcatggggTATAAAATGTCAAAGCTAATAACTGTCTGGATAACAATGCAAGGTGCATCGAAGTTCTAGTGTCAAAGGTTCAGGTAGTAGATATCAGCAACCTTTTAGAAAATCAATCACTTGTACATATTGAGATGAGGATGTAGAAGATAGGAGAGAAACAagaaataaggaataaataatGCAGACATACAGACAATGCAGACTGAATACACTGAAAATTAAGATCAGTACTTTGAGGACAAGATATTGCACTTCATAAACGTCTATACACATTGCAAAAAATCTGCTTTTTCTTAAATGTATACCATCTAGCAAAGCGCAAGCTATGCATGTTTATTCacttatcatttatttattatagaggCACATGTGATTTctcaataaaacaaatttataaaGGAATTTATTCACATTGCCTTTGTTCTCTAAGCAGTATTGCATTCATGGTTATGCATTTTCATGAGATTTGATGAAAAAATATTAGAAGCTCCTAACTGTTAGCCTCTTCAGAATGAAATTCCTTACTGAATATTTAAGCACAATTCAAAGGCACATATAAGCTAAAcgatttttatttgtatcatgCTCAAGCGATAGCTAAGAAGAAAGATGTCAAGAGAATGGATCACAACATGTCAAGAATGCAGAGCAGGGACATAATGAGAAAACAGGGAAGACAGAGAAGaaggataaagagagagagagaattaagaaACACTGAGATGCTGTACTTATATTTTAATGAAGTGGCAATCAGAGAAGCTGCTTTAGCATTAGCTGTGAATGCTGTGATTTGTTTTGGCatgtctctgtgtttttcttgttaggtgactttttaaaatgacaatatgTGCAGTGATGAGCATTGATGTGATTTGTTCAGGAAACCCCATTTGCTCTTTTTGTGGTTGTCATAAAGATGATCCTATTTCTGGTTTGGCATGATGGTCAGTAAAAACATCTCTTTACTAAACGA

Function

symbol description
stmn4 Predicted to enable tubulin binding activity. Acts upstream of or within regulation of cell cycle G2/M phase transition and regulation of neuron differentiation. Located in Golgi apparatus. Is expressed in midbrain neural keel; nervous system; and neural tube. Orthologous to human STMN4 (stathmin 4).

NR:

description
stathmin-4-like

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946998.2 False 1885 mRNA 0.41 6 2612201 2618880
XM_026946999.2 True 2510 mRNA 0.40 6 2612500 2618880
XM_026947000.2 False 1925 mRNA 0.40 6 2612321 2618880

Neighbor

gene id symbol gene type direction distance location
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 137598 2454793 ~ 2474603 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 173161 2436698 ~ 2439040 (+)
fzd3a fzd3 coding upstream 257603 2336070 ~ 2354598 (+)
tdrd6 NA coding upstream 400000 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 431045 2162431 ~ 2181156 (+)
paqr8 LOC100304624 coding downstream 21400 2640280 ~ 2644268 (+)
LOC113546789 NA coding downstream 27193 2646073 ~ 2654271 (+)
znf395b znf395 coding downstream 37889 2656769 ~ 2664965 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding downstream 65493 2684373 ~ 2702470 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding downstream 107508 2726388 ~ 2747064 (+)
G288734 NA non-coding upstream 3828 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 96826 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 158827 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 285912 2325658 ~ 2326289 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 393563 2215577 ~ 2218638 (+)
G288740 NA non-coding downstream 8878 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 145390 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 250716 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 251482 2870362 ~ 2870666 (+)
G288839 NA non-coding downstream 359453 2978333 ~ 2980205 (+)
cnstb LOC108257742 other upstream 116149 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 470020 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 590938 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1252085 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1347569 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1324614 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1369172 3988052 ~ 3988123 (+)
G289531 NA other downstream 1435577 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1629450 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1709952 4328832 ~ 4338299 (+)

Expression


Co-expression Network