lft1 (lft1,LOC108257744,LOC107732386,LOC107698358)


Basic Information

Item Value
gene id lft1
gene name lft1,LOC108257744,LOC107732386,LOC107698358
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2436698 ~ 2439040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947002.2
CAAAGCCCCAGTGTTTCACTTCCACTCAGTGCTAGAAGGACTAAGAACTTCAGGACTTCTTCGGAGCTAGCCATGGCGTCTGTTCTTGCCTCCTGCTTCCTCTGCGCGCTCGTTCTGGCACTGACAGAAGCCTTTACGCACGACGACATGAAGGACGCCCTGCTGAAAAAACTAGGACTCGACCAGGTGCCTCAGATTCATAAGCGGGACCTGGAGAACCTGGTGGTGCCAGCGCACATTAAGAACAAGTACGTGTCCATGCTGAAGCTTCACCACCAAAGGAGGCGCCGCTCTCTTCCCAGTTTGGCAGGGATTTTACGCGGCATCCCGGGTAACGCAGACATCTCTGGAGAACTGGTGTATTCTGACACGACGCGTCAGCGCGTGGTGTTCGAGATGAACTCAAGGATTCCAGCCAACAGCGAGGTGACCATGGCCGAGCTGAAGCTGTACAAGAAAGCGCCACACAAGCGATCCATGCCCGAGAGGAAGGGGCAGAGGCCTGTGAACAACGCGCGAGTCAGCATTTACTGGGTGGAGGTGCTCGGGAACGGCTCGAACCGCACTTCCCTCGTCGACTCCAGGTTGATTCCCATCCATGAATCAGGCTGGAAGAGCTTCGATGTCACGCAGGCTGTACATTACTGGTCCAAGAGTGAGCAGAACGCACCCATGCACCTGGAGGTGTGGATCGAGGGCGAGAGACCCGGCAGTTACGCAGCGGAAATGGCCAAGAGCGTCCAGTTTACCACTCAGGAGCCGAGCGACATACTGGGCAAACCCGAGCTCGTCCTCTACACACTTAACCTTGAAGAGTTTGGTTCACACGGTGACTGCGAGCCGAACAGGAGTAAGGAGCTGTGCTGCCGTGAGGAGTACTTCATTAACTTCCGCGCTCTGACCTGGACGCAGTACTGGGTGATCGAGCCCGCGGGTTATCAGGCGTTCCGCTGTGCGGGGGGCTGCAGGCAGCCGCAGCGCGGGCTTTACCCGTACGGCCAGAGGAAGTGCGCGGTGGTGGAGAGCGCCCCGCTGCCCATGATGTACCTGGTGAAAAAGGGCGATTACACCGAAATCGAAGTGGCCGAATTTCCGAACATGATCGTGGAGAAGTGCGGCTGCGCCATGGACAACACTTCCCTTGTGTAACTCCAAACCCCtcttacaaacaaacacacagtactTACAGCTtcttttaagctttttttctcttccctgctttctttcttttttctaatgAACATTGTCCTCTGGCCTGGCTGAACTACCTCAAGCACTTTGTATGAAGTTTGTATGTATTTGGTGTAATGAAacgtattattatttttattactattatttttattattattattgttattgctcatttttttttgcattggcAACCGACA

Function

symbol description
lft1 Predicted to enable cytokine activity. Acts upstream of or within determination of left/right symmetry; dorsal/ventral pattern formation; and embryonic heart tube development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including blastodisc; brain; germ ring; mesoderm; and tail bud. Orthologous to several human genes including LEFTY2 (left-right determination factor 2).

NR:

description
PREDICTED: left-right determination factor 2

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0016049 cell growth biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04668 LEFTY; left-right determination factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947002.2 True 1391 mRNA 0.53 4 2436698 2439040

Neighbor

gene id symbol gene type direction distance location
fzd3a fzd3 coding upstream 82100 2336070 ~ 2354598 (+)
tdrd6 NA coding upstream 224497 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 255542 2162431 ~ 2181156 (+)
adgrf3b adgrf1 coding upstream 278004 2151234 ~ 2158694 (+)
LOC117599673 NA coding upstream 305427 2122561 ~ 2131271 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 15753 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 173161 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 201240 2640280 ~ 2644268 (+)
LOC113546789 NA coding downstream 207033 2646073 ~ 2654271 (+)
znf395b znf395 coding downstream 217729 2656769 ~ 2664965 (+)
G288512 NA non-coding upstream 110409 2325658 ~ 2326289 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 218060 2215577 ~ 2218638 (+)
LOC117599781 NA non-coding upstream 285460 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 362817 2026869 ~ 2073881 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 9382 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 67529 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 142269 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 188718 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 325230 2764270 ~ 2765055 (+)
LOC113546780 NA other upstream 294517 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 415435 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1076582 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1172066 1259176 ~ 1264632 (+)
G287892 NA other upstream 1193026 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 45996 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1504454 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1549012 3988052 ~ 3988123 (+)
G289531 NA other downstream 1615417 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1809290 4248330 ~ 4309929 (+)

Expression


Co-expression Network