slc5a6a (slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475)


Basic Information

Item Value
gene id slc5a6a
gene name slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1014884 ~ 1036096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947247.2
GGTTATGGGCTGAAGGAGAGTAGGCGGTCTCTCGCTCAGGACCTCGTTCCTCCCTTCAGTTACAGCAGACACGCTGCATGGTCCACGAGTCTCGCCGCATTCAGAGGCACTAGTGAAGATTCTATGGCCAGCCACCCACTGTTGCTGTACTAGTCAACTTGTCGTGGCCATACCGCTCCAGGTACATCATGGGCGACATAGACCAGATGCACTTCACTGCAGTGGACTATGCTATCTTCGTGCTGCTCCTTGTAGCTTCAGCGGGCATTGGCCTGTTCCATGCATTTTCAGGGGGCCGCCAGAGCACCACGCGCGAGTTTCTGCTGGCTGACCGCAGCATGAGCTGCCTACCTGTGTCACTATCCCTGCTTGCCACCTTCCAGTCGGCTGTAGCTATCTTGGGTGCACCGGCTGAAATCTATGCTTACGGCACGCAGTACTGGTTCTTGGGCTGCTCCTACTTCCTGGGCCTGCTCATCCCAGCACACATCTTCATCCCTGTTTTCTACCGCCTGCGTCTTTCCAGCGCCTACCAGTATCTAGAGCTTCGTTTCAATAAAACTGTACGGATATGTGGCACTGTCACCTTCATCTTTCAGATGGTAATCTACATGGGAGTGGTGCTGTATGCTCCTGCGCTTGCACTGAATGCAGTAACTGGTTTTGACCTCTGGGGGGCTGTTCTGGCAATGGGTCTTGTGTGCACACTATACACAACACTGGGTGGCCTGAAAGCAGTCATCTGGACAGACGTGTTCCAGACAGTTGTAATGTTTGCTGGGCAGCTGGCTGTGATCGTGGTGGGCACCCATCAGGCAGGTGGCATGGCTGAGGTGTGGATGAAAGCCCAGAATGGCAGCCGTATCTCAGGCATCGAGCTGAACCCTGACCCCCTGGAGAGGCACACATTTTGGACATTGGCTGTTGGGGGCATCTTCCTCATGCTGGCACTCTATGGAGTGAACCAGGCTCAGGTCCAGCGATATCTCAGCTCCCGCTCTGAAAGAGAGGCCATCATGTCCTGCTATGTGGTGTTTCCATGCCAGCAGATAGTCCTGGCACTTGGTTGTCTCATGGGACTGGTCATGTTTGCCCGCTACGGTGAAGACAGTCCTTTGGACAAGGGCTACGTTCAGACCAATGACCAGATGGTGTTGTATTTTGTGATGGATGTGCTCAGAGACCTTCCTGGTTTGCCTGGACTGTTTGTTGCTTGTCTTTTCAGTGGGGCTCTCAGCACAATTTCATCTGCCTTCAACTCCCTGGCGACGGTTACTATGGAAGATCTGATTAAGCCCTTTTATCCTGGCATGACGGAGGCACGAGCCACACTGATGTCCAAAGGCCTTGCTCTTGGCTATGGACTGGTGTGTCTAGCTATGGCCTACATCGCTTCTCTAATGGGCTCTGTGTTACAGGCAGCACTCAGTATTTTTGGGATGGTTGGTGGGCCTCTTCTTGGCCTCTTCTGTCTAGGCATGTTCTTTCCCTGGGCCAACTCTATTGGAGCAGTGACTGGCTTGGTAGCAGGACTAATTATGGCTTTCTGGATTGGCATTGGCAGCTTTGTCTCCCGTATGCAAGCACCAGGAACACCCATATTTAACACCACAATCATTCATGACACAGGCAACACAACTGCCATCATGACTACTGTCATCAGCTCTATTACAGCAAAACCCAGGCCCACTGGACTGCAGGCTCTCTATTCGTTGTCCTACATGTGGTATAGCGCTCACAATTCAGCCACAGTTGTAGTGGTAGGACTGTTGGTCAGCCTTCTTACTGGACCCTGGAAAGAGAAGGATTTGACCCCAGGTACTGTTTACCCTGTGTTTGGAATGCTGCTGTTCTTTCTACCTGAGCGTTACAGAGAGAAGCTGTGCTGTGTTACTCCTCTGGAACACAAGTCCAAGGACCTGGATAGGCAGCCGTatcaaaatggaaagaaagagaatggaATTGTCCAAATTCAGGATGAAGACAAGAATGAACAGGAGGAGTCGAAAACCTCACAGGCTTCTGGCAAGCTGGTGAATGTGGAGCAGGAGACGGCTTTGTGATTTTCTGTAAATTCATTATATAACAGATGCTTAAGGccatatttattgttatatgaACCGAAAAAAATTGCCATGATGATGTTAACTGTCCAGGTCGTACCTTTGCACAATCTTTTGTTGTATGTTGTAATGATAAGGCAGTACTGATGAATTCAGCACTTCACTCATGAAGTaagatgtgtgtgaaatgtacaATTCATTTTCTGTATGAGTAGATAAATGTGACATGACAATTGACCAATTAAGCAAACAGCCACAGCATTTGCACATTTCGTAGAAAATGAAGAGCTATGTCTAAGTGACTAGAAGCAAAAGAATATTAatagaataaaaacacatactAGGAGCATTTCATTACCTATTTtcaatacagtgtgtgtggcccatttttgtatttaagctGGTTTGTTTGATATGCGCGTCCCAGACAAAAATCAGGAGCTTATGTCATTTCTTTCGTATTACCCACCTTAATAGTCATACAACCTCTGAGTCTGGTCAACGGCTGACAAATCCAGTTTTATGCTAAGTTATATTCATTGACATTGAACAGTAAGTCACTATTATTGGTGAATGTGACATTTTTTGTCTGGGGAACAAAATTTATCTGTACTGCTGGGTTTAGTTGCCATTAGCCTTTATACATTACTACAGAAACTCTTAGTGTCTGAACTACTGAGCAAAAGgcttaataatttttaaatgaccCCATAAAAGACTTTTTGAGAGGGAGGATGCTGCTCCTGGGGAACTTCACCATTCATTGCATTTATTTGATGTCATTGCTACAATCAATTGCTTAATTGTTCCAAACTTCAGCACTCATACTTCATTGTAAACATCTCCACATAGAAATGTATTATGATTGCACTGTGctaatgttttttgtgtttggaaAAGTTTTGTTGGCAGTAGGAATGTGCTGATATAAACTTTTCCAGCACCCATAATTGTCTAATGGTTTATGATATAACAATATTGTATgttaaaaaattctttattaCTAAAAACGTTTTGCAGATTGATCACTAA
>XM_034313794.1
GGTTATGGGCTGAAGGAGAGTAGGCGGTCTCTCGCTCAGGACCTCGTTCCTCCCTTCAGTTACAGCAGACACGCTGCATGGTCCACGAGTCTCGCCGCATTCAGCTAGTCACTTGTACTGCTTTGATCCTACTCCATTAAACACCCAGACAGGAAGGAGACTCATCCAGAGCACTCAGctttttcaattatttatgAAGTTTTTTTCATCCTGGGTATTAGAAGAGGCACTAGTGAAGATTCTATGGCCAGCCACCCACTGTTGCTGTACTAGTCAACTTGTCGTGGCCATACCGCTCCAGGTACATCATGGGCGACATAGACCAGATGCACTTCACTGCAGTGGACTATGCTATCTTCGTGCTGCTCCTTGTAGCTTCAGCGGGCATTGGCCTGTTCCATGCATTTTCAGGGGGCCGCCAGAGCACCACGCGCGAGTTTCTGCTGGCTGACCGCAGCATGAGCTGCCTACCTGTGTCACTATCCCTGCTTGCCACCTTCCAGTCGGCTGTAGCTATCTTGGGTGCACCGGCTGAAATCTATGCTTACGGCACGCAGTACTGGTTCTTGGGCTGCTCCTACTTCCTGGGCCTGCTCATCCCAGCACACATCTTCATCCCTGTTTTCTACCGCCTGCGTCTTTCCAGCGCCTACCAGTATCTAGAGCTTCGTTTCAATAAAACTGTACGGATATGTGGCACTGTCACCTTCATCTTTCAGATGGTAATCTACATGGGAGTGGTGCTGTATGCTCCTGCGCTTGCACTGAATGCAGTAACTGGTTTTGACCTCTGGGGGGCTGTTCTGGCAATGGGTCTTGTGTGCACACTATACACAACACTGGGTGGCCTGAAAGCAGTCATCTGGACAGACGTGTTCCAGACAGTTGTAATGTTTGCTGGGCAGCTGGCTGTGATCGTGGTGGGCACCCATCAGGCAGGTGGCATGGCTGAGGTGTGGATGAAAGCCCAGAATGGCAGCCGTATCTCAGGCATCGAGCTGAACCCTGACCCCCTGGAGAGGCACACATTTTGGACATTGGCTGTTGGGGGCATCTTCCTCATGCTGGCACTCTATGGAGTGAACCAGGCTCAGGTCCAGCGATATCTCAGCTCCCGCTCTGAAAGAGAGGCCATCATGTCCTGCTATGTGGTGTTTCCATGCCAGCAGATAGTCCTGGCACTTGGTTGTCTCATGGGACTGGTCATGTTTGCCCGCTACGGTGAAGACAGTCCTTTGGACAAGGGCTACGTTCAGACCAATGACCAGATGGTGTTGTATTTTGTGATGGATGTGCTCAGAGACCTTCCTGGTTTGCCTGGACTGTTTGTTGCTTGTCTTTTCAGTGGGGCTCTCAGCACAATTTCATCTGCCTTCAACTCCCTGGCGACGGTTACTATGGAAGATCTGATTAAGCCCTTTTATCCTGGCATGACGGAGGCACGAGCCACACTGATGTCCAAAGGCCTTGCTCTTGGCTATGGACTGGTGTGTCTAGCTATGGCCTACATCGCTTCTCTAATGGGCTCTGTGTTACAGGCAGCACTCAGTATTTTTGGGATGGTTGGTGGGCCTCTTCTTGGCCTCTTCTGTCTAGGCATGTTCTTTCCCTGGGCCAACTCTATTGGAGCAGTGACTGGCTTGGTAGCAGGACTAATTATGGCTTTCTGGATTGGCATTGGCAGCTTTGTCTCCCGTATGCAAGCACCAGGAACACCCATATTTAACACCACAATCATTCATGACACAGGCAACACAACTGCCATCATGACTACTGTCATCAGCTCTATTACAGCAAAACCCAGGCCCACTGGACTGCAGGCTCTCTATTCGTTGTCCTACATGTGGTATAGCGCTCACAATTCAGCCACAGTTGTAGTGGTAGGACTGTTGGTCAGCCTTCTTACTGGACCCTGGAAAGAGAAGGATTTGACCCCAGGTACTGTTTACCCTGTGTTTGGAATGCTGCTGTTCTTTCTACCTGAGCGTTACAGAGAGAAGCTGTGCTGTGTTACTCCTCTGGAACACAAGTCCAAGGACCTGGATAGGCAGCCGTatcaaaatggaaagaaagagaatggaATTGTCCAAATTCAGGATGAAGACAAGAATGAACAGGAGGAGTCGAAAACCTCACAGGCTTCTGGCAAGCTGGTGAATGTGGAGCAGGAGACGGCTTTGTGATTTTCTGTAAATTCATTATATAACAGATGCTTAAGGccatatttattgttatatgaACCGAAAAAAATTGCCATGATGATGTTAACTGTCCAGGTCGTACCTTTGCACAATCTTTTGTTGTATGTTGTAATGATAAGGCAGTACTGATGAATTCAGCACTTCACTCATGAAGTaagatgtgtgtgaaatgtacaATTCATTTTCTGTATGAGTAGATAAATGTGACATGACAATTGACCAATTAAGCAAACAGCCACAGCATTTGCACATTTCGTAGAAAATGAAGAGCTATGTCTAAGTGACTAGAAGCAAAAGAATATTAatagaataaaaacacatactAGGAGCATTTCATTACCTATTTtcaatacagtgtgtgtggcccatttttgtatttaagctGGTTTGTTTGATATGCGCGTCCCAGACAAAAATCAGGAGCTTATGTCATTTCTTTCGTATTACCCACCTTAATAGTCATACAACCTCTGAGTCTGGTCAACGGCTGACAAATCCAGTTTTATGCTAAGTTATATTCATTGACATTGAACAGTAAGTCACTATTATTGGTGAATGTGACATTTTTTGTCTGGGGAACAAAATTTATCTGTACTGCTGGGTTTAGTTGCCATTAGCCTTTATACATTACTACAGAAACTCTTAGTGTCTGAACTACTGAGCAAAAGgcttaataatttttaaatgaccCCATAAAAGACTTTTTGAGAGGGAGGATGCTGCTCCTGGGGAACTTCACCATTCATTGCATTTATTTGATGTCATTGCTACAATCAATTGCTTAATTGTTCCAAACTTCAGCACTCATACTTCATTGTAAACATCTCCACATAGAAATGTATTATGATTGCACTGTGctaatgttttttgtgtttggaaAAGTTTTGTTGGCAGTAGGAATGTGCTGATATAAACTTTTCCAGCACCCATAATTGTCTAATGGTTTATGATATAACAATATTGTATgttaaaaaattctttattaCTAAAAACGTTTTGCAGATTGATCACTAA

Function

symbol description
slc5a6a Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6).
slc5a6 Enables biotin transmembrane transporter activity and pantothenate transmembrane transporter activity. Involved in anion transmembrane transport and transport across blood-brain barrier. Located in plasma membrane.

NR:

description
PREDICTED: sodium-dependent multivitamin transporter-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14386 SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947247.2 False 3095 mRNA 0.46 16 1014884 1036096
XM_034313794.1 True 3215 mRNA 0.46 17 1014884 1036096

Neighbor

gene id symbol gene type direction distance location
LOC117599763 NA coding upstream 117598 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 153394 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 182059 832360 ~ 832825 (+)
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 183038 831420 ~ 831846 (+)
LOC117599755 h2afx,LOC107386469,LOC106516344,LOC100693699,LOC101160258,LOC107677420 coding upstream 188721 824677 ~ 826163 (+)
LOC117599792 NA coding downstream 167417 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 257686 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 304412 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 327988 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 436086 1472182 ~ 1519008 (+)
G287817 NA non-coding upstream 7878 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 24449 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 88245 926233 ~ 926639 (+)
G287630 NA non-coding upstream 121380 801623 ~ 893504 (+)
G287627 NA non-coding upstream 212360 762431 ~ 802524 (+)
G287872 NA non-coding downstream 147987 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 205765 1241861 ~ 1242067 (+)
G287962 NA non-coding downstream 398459 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 417479 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 418874 1454970 ~ 1455834 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 116474 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 117522 806306 ~ 897362 (+)
G287892 NA other downstream 206961 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 223080 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 322090 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 960024 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1097062 2133158 ~ 2142181 (+)

Expression


Co-expression Network