LOC117599673


Basic Information

Item Value
gene id LOC117599673
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2122561 ~ 2131271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313448.1
atGCAGGTCAGCTGTAGAGGGAAAGCATTGAGTCTCCAACCTGTAGCCAGATGATTAGTGTACGCTTTGGTTGGCCGATTGTTGGAGTCAAGCCTGTTGAAAATTCAGGACAACAGAATCCAAAATCTAAAGAGGCAAAATGGCAACCACAGAAAAGACGTCAAACTACCTTCTGACATTCACAGCCATCTTACTAATGAAAACGTGTGTTGTGGAAACACAAGGATTCCTTGAAACATCAGCCTACACTGCTGAGCTTAATTCCAAAGATGGGCAACTCAATCACTCAAGACAAAAACGAGAAACTAGTCCGTATGCAGTGCAATACATCGTGGTGGTAGAGGTAAATGTCTCTGAAGTGATTTTGATACAGCAACTCAAATCATTATTCAATCTTCAGATAGACAACTCCACTAAAATCTCTTCTGTGGAAATAACCACTGtgtgccaATTAAATGACACTGGATACCAATGCAGGTGTGAGGATCAGTATTTTTGGCCATGTGACAAGTGCATGGAATATGGGCCATGCAATAATGGCACCGCCAATTCCTCCTGTTATTGCATCAATGGTGTTCCAAGTGATGGACAGTTCTGCCAGCCAATAAGTAACATATCAAATGGAACATGTCCAACTCCACCCCCAGCATCAGGTAAAGTAGTAAACTGTTTGATCTCATATGATACTACTCCTGTTTTTTGTATTGATGTATTGATGAAACTTTGATAATTATGTGATTGAAATCAAGAGATAAAAATCAAGACTAGGCTATATGATTCACTGATGAGCTAAATTGGATTTGGAAGTGCATCTGGTTACAAATCccattttatttactaatgtTTGGACAAGTCGTGGTGGTGAGTAGTGTGTGGAATCATCTTTGCCTCCTAAGACCTGTGTAAACAGGGCATCAGGTGTGTTGTTAGAAATGGTTATAGCAGCCAGACAGGAGCACAGGTTTTAAAGATGTGctgaaaggagaagaagaagagtatTTACTAGTAGAATATCCTATAGCTGTTGATAAAGTGTTCATTCAAATCCAACCCCTTTATAAAGTTACACTGAGAATATATAATGCACCAATCCTATACATTTGTTGTGGTTGTGCACAAAACTAAAGCCCTCAGTGTTTGAAACAGATGCTCAAATTACAAAGCTATATTCACACAATTGCCATTAATGACCTGTAGTTGGCAGTATTATAACAGGTACTGTAACATACAGGGAAACTTGGGTTGATATCACTGAAGTGTTAAACCACACTACCACTGAAGTGTTATTCACCTCAGTGAATAAACCACACCACATTAAGAGAAAGTCTGGTCTCCTGGCAGGTTTATGAATTAATTTCAAAACTTTTTGTGCCTGCAGGATAGGGTG
>XM_034313449.1
aatgagcagctgtacaggtgttcctattaaagtggacgCCTGTTGAAAATTCAGGACAACAGAATCCAAAATCTAAAGAGGCAAAATGGCAACCACAGAAAAGACGTCAAACTACCTTCTGACATTCACAGCCATCTTACTAATGAAAACGTGTGTTGTGGAAACACAAGGATTCCTTGAAACATCAGCCTACACTGCTGAGCTTAATTCCAAAGATGGGCAACTCAATCACTCAAGACAAAAACGAGAAACTAGTCCGTATGCAGTGCAATACATCGTGGTGGTAGAGGTAAATGTCTCTGAAGTGATTTTGATACAGCAACTCAAATCATTATTCAATCTTCAGATAGACAACTCCACTAAAATCTCTTCTGTGGAAATAACCACTGtgtgccaATTAAATGACACTGGATACCAATGCAGGTGTGAGGATCAGTATTTTTGGCCATGTGACAAGTGCATGGAATATGGGCCATGCAATAATGGCACCGCCAATTCCTCCTGTTATTGCATCAATGGTGTTCCAAGTGATGGACAGTTCTGCCAGCCAATAAGTAACATATCAAATGGAACATGTCCAACTCCACCCCCAGCATCAGGTAAAGTAGTAAACTGTTTGATCTCATATGATACTACTCCTGTTTTTTGTATTGATGTATTGATGAAACTTTGATAATTATGTGATTGAAATCAAGAGATAAAAATCAAGACTAGGCTATATGATTCACTGATGAGCTAAATTGGATTTGGAAGTGCATCTGGTTACAAATCccattttatttactaatgtTTGGACAAGTCGTGGTGGTGAGTAGTGTGTGGAATCATCTTTGCCTCCTAAGACCTGTGTAAACAGGGCATCAGGTGTGTTGTTAGAAATGGTTATAGCAGCCAGACAGGAGCACAGGTTTTAAAGATGTGctgaaaggagaagaagaagagtatTTACTAGTAGAATATCCTATAGCTGTTGATAAAGTGTTCATTCAAATCCAACCCCTTTATAAAGTTACACTGAGAATATATAATGCACCAATCCTATACATTTGTTGTGGTTGTGCACAAAACTAAAGCCCTCAGTGTTTGAAACAGATGCTCAAATTACAAAGCTATATTCACACAATTGCCATTAATGACCTGTAGTTGGCAGTATTATAACAGGTACTGTAACATACAGGGAAACTTGGGTTGATATCACTGAAGTGTTAAACCACACTACCACTGAAGTGTTATTCACCTCAGTGAATAAACCACACCACATTAAGAGAAAGTCTGGTCTCCTGGCAGGTTTATGAATTAATTTCAAAACTTTTTGTGCCTGCAGGATAGGGTG

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313448.1 True 1387 mRNA 0.39 7 2122561 2131271
XM_034313449.1 False 1333 mRNA 0.39 7 2124988 2131271

Neighbor

gene id symbol gene type direction distance location
tnfrsf21 tnfrsf21 coding upstream 2644 2092475 ~ 2119917 (+)
si:dkey-1j5.4 LOC108257701 coding upstream 206701 1912614 ~ 1915860 (+)
lbr lbr coding upstream 220568 1892769 ~ 1901993 (+)
enah enah coding upstream 233368 1824985 ~ 1889193 (+)
ppil6 ppil6 coding upstream 321643 1786487 ~ 1800918 (+)
adgrf3b adgrf1 coding downstream 19963 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 31160 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 58488 2189759 ~ 2212201 (+)
fzd3a fzd3 coding downstream 204799 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 305427 2436698 ~ 2439040 (+)
G288225 NA non-coding upstream 48680 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 51285 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 126882 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 187778 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 424394 1695908 ~ 1698167 (+)
LOC117599781 NA non-coding downstream 15944 2147215 ~ 2151238 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 84306 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 194387 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 317151 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 375298 2506569 ~ 2515375 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 101298 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 762445 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 857929 1259176 ~ 1264632 (+)
G287892 NA other upstream 878889 1243057 ~ 1243672 (+)
G287628 h3f3b,LOC105888650,LOC101068541,LOC105896821,LOC105893409 other upstream 1230553 812277 ~ 892008 (+)
LOC113546780 NA other downstream 1887 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 353765 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1812223 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1856781 3988052 ~ 3988123 (+)
G289531 NA other downstream 1923186 4054457 ~ 4070367 (+)

Expression


Co-expression Network