LOC117599677


Basic Information

Item Value
gene id LOC117599677
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1259176 ~ 1264632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313501.1
CATTCAGGAGAAAGACCAACGGATGATGAACATGTTCGCCCTTGTCGAGTGGAAAGAAGAAACGGATAATGAAAGTTGGAGCATTGTTCCAACGTCACACATAAAAAACTTCGATAATAATGATTTCTTAGACGGACTGGATGACACATCCGTATATTTAATTAAGTGGAGAGGAGGACTGAAGAAAAAACCTAAAGGCGGATGGCCTTTGTACGAGGCAACGGTGCATAAAATTGCAGagaAACAGTGCACCCTAGAAAAACTAATGAGGACACAACGTCAGTCCAGTCCAAAACTTCtgagcaaaagaaaatgcaggCCAAACCCTAAGTTTGTTGAAGAGGAGACCAGCAATGATGGACCATCTAGCCCCAAAAAGAGGCAAACTAGTGATGGAAATTTGGACAGGGAGCttttggagaaaataaaattaccCCATGGACCTCGATTCCCTTCAGCTACAACTTCAGTTGTTCCACCTTCACCTACCTCACCATCTTCTGCCTCACCACCGCTGCCTAACTGTCCACCTACACCACCATCAGCTCCATCTTCACCTGCCTCATCATCGTCTGCTTCACCTCCACCTACCTCACCTTCTTCTGATCCTCCTTTGCCAGACATCATAGCACAATTAAAGGCAGAAAATGAAGCCCTCAAAATGGAATTAGAGAATCTAAAAACAAATGTTGTCAGTCAAATGCCAAAACTCCTCAGTATAATGTGCAAGCTGGGGGAATGGCTTGAAGGGAAGGAGCAGAGCCCACAGAAACAACTGGCATCACCTTCCACCATACAGGAAACTGTGGCAAGTCCAAAAATGCAAGCCCTGGGGAAACAAAAGTGGCCTTGGACAGAACAAAAATTGATGCAATAATTAGTATGTACATCACTTGGTTAATTgggctcatttttttttttacagttgtgTTAAACCAAATGTGACAATAAAACCATCAGAATTTATCAGTTTCATCTTGGTGTATCAGTGTGATGACACTTTACACCTGGTTCTGAATAATGCCTAAATTTCAGAAACATTCAGTTTATCTACCTAACGAAGTACGTCCTGTGTtaatttagtgtgttttagGTGATTATAATTTGAATGtccttaaataaatgttt
>XM_034313502.1
CATTCAGGAGAAAGACCAACGGATGATGAACATGTTCGCCCTTGTCGAGTGGAAAGAAGAAACGGATAATGAAAGTTGGAGCATTGTTCCAACGTCACACATAAAAAACTTCGATAATAATGATTTCTTAGACGGACTGGATGACACATCCGTATATTTAATTAAGTGGAGAGGAGGACTGAAGAAAAAACCTAAAGGCGGATGGCCTTTGTACGAGGCAACGGTGCATAAAATTGCAGagaAACAGTGCACCCTAGAAAAACTAATGAGGACACAACGTCAGTCCAGTCCAAAACTTCtgagcaaaagaaaatgcaggCCAAACCCTAAGTTTGTTGAAGAGGAGACCAGCAATGATGGACCATCTAGCCCCAAAAAGAGGCAAACTAGTGATGGAAATTTGGACAGGGAGCttttggagaaaataaaattaccCCATGGACCTCGATTCCCTTCAGCTACAACTTCAGTTGTTCCACCTTCACCTACCTCACCATCTTCTGCCTCACCACCGCTGCCTAACTGTCCACCTACACCACCATCAGCTCCATCTTCACCTGCCTCATCATCGTCTGCTTCACCTCCACCTACCTCACCTTCTTCTGATCCTCCTTTGCCAGACATCATAGCACAATTAAAGGCAGAAAATGAAGCCCTCAAAATGGAATTAGAGAATCTAAAAACAAATGTTGTCAGTCAAATGCCAAAACTCCTCAGTATAATGTGCAAGCTGGGGGAATGGCTTGAAGGGAAGGAGCAGAGCCCACAGAAACAACTGGCATCACCTTCCACCATACAGGAAACTCTTGAAATTCACCCAGGCTCAGGAGTTTGTgtgacaaaaaaatgtgttctggtcAGCTAGCCATGCAAACAGCCCCACTACCATGGCACGGATGCTTCTCCTTGGAGTATTTGATATTGAGACACTTCTAAAGAGCAATCTCAGAGGTGGCAAGTCCAAAAATGCAAGCCCTGGGGAAACAAAAGTGGCCTTGGACAGAACAAAAATTGATGCAATAATTAGTATGTACATCACTTGGTTAATTgggctcatttttttttttacagttgtgTTAAACCAAATGTGACAATAAAACCATCAGAATTTATCAGTTTCATCTTGGTGTATCAGTGTGATGACACTTTACACCTGGTTCTGAATAATGCCTAAATTTCAGAAACATTCAGTTTATCTACCTAACGAAGTACGTCCTGTGTtaatttagtgtgttttagGTGATTATAATTTGAATGtccttaaataaatgttt
>XR_004580082.1
CATTCAGGAGAAAGACCAACGGATGATGAACATGTTCGCCCTTGTCGAGTGGAAAGAAGAAACGGATAATGAAAGTTGGAGCATTGTTCCAACGTCACACATAAAAAACTTCGATAATAATGATTTCTTAGACGGACTGGATGACACATCCGTATATTTAATTAAGTGGAGAGGAGGACTGAAGAAAAAACCTAAAGGCGGATGGCCTTTGTACGAGGCAACGGTGCATAAAATTGCAGagaAACAGTGCACCCTAGAAAAACTAATGAGGACACAACGTCAGTCCAGTCCAAAACTTCtgagcaaaagaaaatgcaggCCAAACCCTAAGTTTGTTGAAGAGGAGACCAGCAATGATGGACCATCTAGCCCCAAAAAGAAATGCCAAAACTCCTCAGTATAATGTGCAAGCTGGGGGAATGGCTTGAAGGGAAGGAGCAGAGCCCACAGAAACAACTGGCATCACCTTCCACCATACAGGAAACTCTTGAAATTCACCCAGGCTCAGGAGTTTGTgtgacaaaaaaatgtgttctggtcAGCTAGCCATGCAAACAGCCCCACTACCATGGCACGGATGCTTCTCCTTGGAGTATTTGATATTGAGACACTTCTAAAGAGCAATCTCAGAGGTGGCAAGTCCAAAAATGCAAGCCCTGGGGAAACAAAAGTGGCCTTGGACAGAACAAAAATTGATGCAATAATTAGTATGTACATCACTTGGTTAATTgggctcatttttttttttacagttgtgTTAAACCAAATGTGACAATAAAACCATCAGAATTTATCAGTTTCATCTTGGTGTATCAGTGTGATGACACTTTACACCTGGTTCTGAATAATGCCTAAATTTCAGAAACATTCAGTTTATCTACCTAACGAAGTACGTCCTGTGTtaatttagtgtgttttagGTGATTATAATTTGAATGtccttaaataaatgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313501.1 False 1128 mRNA 0.41 5 1259176 1264632
XM_034313502.1 True 1274 mRNA 0.42 6 1259176 1264632
XR_004580082.1 False 955 misc_RNA 0.41 5 1259176 1264632

Neighbor

gene id symbol gene type direction distance location
LOC117599792 NA coding upstream 51137 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 223080 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 361890 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 397686 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 426351 832360 ~ 832825 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 29150 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 75876 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 99452 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 207550 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 211520 1476152 ~ 1478084 (+)
G287891 NA non-coding upstream 17109 1241861 ~ 1242067 (+)
G287872 NA non-coding upstream 74813 1184083 ~ 1184363 (+)
G287817 NA non-coding upstream 252170 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 268741 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 332537 926233 ~ 926639 (+)
G287962 NA non-coding downstream 169923 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 188943 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 190338 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 191276 1455908 ~ 1456374 (+)
G288047 NA non-coding downstream 208081 1472713 ~ 1473097 (+)
G287892 NA other upstream 15504 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 360766 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 361814 806306 ~ 897362 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 93554 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 731488 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 868526 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1220404 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2678862 3943494 ~ 3982694 (+)

Expression


Co-expression Network