LOC113524753


Basic Information

Item Value
gene id LOC113524753
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20593441 ~ 20611269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313534.1
AAGAAGACGAGCTGCAGTATTTATTTCCTGGAGTCAAAAGCTGAGTTTTCTGAAGCTAAACATATCTACTCTGATCTCTGACAGAGGATTACTGTAAAGgatagttttaaaaataaaaaaaaaatactgtttctgTATTTGAGGTTTTAACTACATTCTGCTTTTAAGACTGAGTCACAACCATTTAGACCTCTTATAATGGACTCAGCCGAGACTCGGCCATGCTCTTCCAGAAAAACTTCAAACACTCCTCCTCCTGTTGATTCACAGCTTTGTGGGGATGTGCAGAGAGGAACAGCTTTAAGTGGAGAGGCAGTGAGTTCACTGGGAGACAGCATCCCTGTGGACcatcatgaacatgtaaaaaaGGAAGAACCTGAAGATGAAGACTATTTCTGTGAAGTGTCATCAAGTTCTCTAAGGCACATGACGCCTGTGGACcaacagaaaaaagaagaacttGAAGATAAAGACTACCTCAGTGGAGAAACATCAAGCTCTGTGGGACACATCCACCTCATAGACCAACAAAAGAATGTAATAAAAGAAGAACCTGAAGATGAAGACTTTCTTTGTGGAGGAACATCAAGCTCTGTGGGACACATCACCCATGAGGGTGAACAGAACAGGGAGGTCCTTAAGAAGGAGATAAAAGAGGAAGAGTCTAAAGATGAAGAGTACCTTTGTACAACAACAGTCTGTGAAATGAACAACACCCAGTTACAAACCTTCACCTGCTCCTGGTGTCCACTAGTCTGTATATCGCAAATTGACCTccaaaaacacatcagaagATGCCACTATGAGGAACATAAGGGACTCCTGAAATCAGGAGACATGAAATATGAGAAACTGATGCCTACAAGAAGCTCAGACAGTCAGCAAGCAATCTCTGCTACTCTGAACTGTAATATCACTCATAGACAAATGCACGAAGGCATctttcactgctcacagtgtgggaagagttttactgaCCAGAGTACTCACCGACAACACCAATGCATTGATAAAGCGGAGAAGCTACAtcactgctcagagtgtgggaaGAACTTTGCCCAACTGAGCCAACTCCAACGCCACCaacgcattcacacaggagagaagccatatcattgttcacagtgtggaaagacATTTATTGGGAAGAATACTCTTAAAGCACACCAGgtcattcacacaggagagaagccacaTCACTGCttacagtgtgggaagagttttgccCAACATGGTAATCTCCAGCGACACCAACTCATTCACAATGGAGGGAAGCCGTATaagtgctcacagtgtgggaagagtttcgCCCAGCAGGGTAATCTACAACgtcaccagcgcattcacaatGGAGAGAAGCCATattactgctcacagtgtgggatgTGTTTTACCCAACAGAGTAATCTCCAacgacaccagcgcattcacaatGGCGAGAAGCCTTATCAATGCTcgcagtgtgggaagagttttataaataagtgtGGTCTCCGAACACACCAGCTCATCCACAATGGAGAGAAGCCACAtcactgctcagagtgtgggaaAAGTTTTATATACAAGAGTGATTTCCAAatacaccagcgcattcacacaggagagaagccgtataaCTGCTCGGAGTGTGGGAAACGTTTTACAACCATGAGTAATTTCCAACGgcatcagcgcattcacacagcaGAGAAGCCACATCACTGCTCACATTGTGGAAAGAATTTTATTCATGAGAATCAACTCCAaaaacaccagcgcattcacacaggagagaagccgtatcagtgcTCAGAGTGCGGGAAGAGTTTTAGTTACAAGAGTCCACTCGAAAAACACCAGCGCAATCACATAGCGCAGAAGCAGATTCAGTGCTTGGTGTGGACAGAGATTCAGTTATTTAGAATTGAAGATACACAAGTGGACCTACATGGAGCTATCAGTTTGTAATGCATGAACTCTAAATTaagttttataattattataattactgtTTAAACAAATTATGCAGGACTTGAAGTGAGCCAGTACTCACTTGTATGCAGTATTTTGCAccttgttttgttctttttaatagcaaatttctttttttttttcatacccAAACTTCTTGTAAGCTTCTTGCAATACTACACTTTACCCCTGCCTAGCCCCAGAGTCAACTGTCTACACCCAAACTGAGTAAAAGTTCAGACCAGTGTGTATGGAGTATAAGAATCACTTAACACATGCActtaaatggaaaaatagaaaCTAACAAGTGTACCTGGGCTTACGCAGCTGGTGTGGATTAAACtgattgttaaaatgaaagctgaaatgccattaaaaaatacttttaaaaaaagcatcagaTATAAATTGGCCTGAATAGAGTCAGAAGATGACATAACTATACCTTAGAATGACAAGGAGATTAAAGTGAGCCGTATTGCACACATCAACATGTATGCAAGGGCGTTACAGAATGACATAAAcccataaaaatatattaaatctcCTCTCAGCTTGTTTTCAAATATGCTTATAACACTATTAACTGTATCTCCGGCAgtaaattttacattaaaatattaaaatttttatccATAACAGTGTGATATTTTGAAGCTGCTGTTCTTAGAGTTAGAAGTGTCCATACAATAAC
>XM_034313535.1
AAGAAGACGAGCTGCAGTATTTATTTCCTGGAGTCAAAAGCTGAGTTTTCTGAAGCTAAACATATCTACTCTGATCTCTGACAGAGGATTACTGTAAAGgatagttttaaaaataaaaaaaaaatactgtttctgTATTTGAGGTTTTAACTACATTCTGCTTTTAAGACTGAGTCACAACCATTTAGACCTCTTATAATGGACTCAGCCGAGACTCGGCCATGCTCTTCCAGAAAAACTTCAAACACTCCTCCTCCTGTTGATTCACAGAGAGGAACAGCTTTAAGTGGAGAGGCAGTGAGTTCACTGGGAGACAGCATCCCTGTGGACcatcatgaacatgtaaaaaaGGAAGAACCTGAAGATGAAGACTATTTCTGTGAAGTGTCATCAAGTTCTCTAAGGCACATGACGCCTGTGGACcaacagaaaaaagaagaacttGAAGATAAAGACTACCTCAGTGGAGAAACATCAAGCTCTGTGGGACACATCCACCTCATAGACCAACAAAAGAATGTAATAAAAGAAGAACCTGAAGATGAAGACTTTCTTTGTGGAGGAACATCAAGCTCTGTGGGACACATCACCCATGAGGGTGAACAGAACAGGGAGGTCCTTAAGAAGGAGATAAAAGAGGAAGAGTCTAAAGATGAAGAGTACCTTTGTACAACAACAGTCTGTGAAATGAACAACACCCAGTTACAAACCTTCACCTGCTCCTGGTGTCCACTAGTCTGTATATCGCAAATTGACCTccaaaaacacatcagaagATGCCACTATGAGGAACATAAGGGACTCCTGAAATCAGGAGACATGAAATATGAGAAACTGATGCCTACAAGAAGCTCAGACAGTCAGCAAGCAATCTCTGCTACTCTGAACTGTAATATCACTCATAGACAAATGCACGAAGGCATctttcactgctcacagtgtgggaagagttttactgaCCAGAGTACTCACCGACAACACCAATGCATTGATAAAGCGGAGAAGCTACAtcactgctcagagtgtgggaaGAACTTTGCCCAACTGAGCCAACTCCAACGCCACCaacgcattcacacaggagagaagccatatcattgttcacagtgtggaaagacATTTATTGGGAAGAATACTCTTAAAGCACACCAGgtcattcacacaggagagaagccacaTCACTGCttacagtgtgggaagagttttgccCAACATGGTAATCTCCAGCGACACCAACTCATTCACAATGGAGGGAAGCCGTATaagtgctcacagtgtgggaagagtttcgCCCAGCAGGGTAATCTACAACgtcaccagcgcattcacaatGGAGAGAAGCCATattactgctcacagtgtgggatgTGTTTTACCCAACAGAGTAATCTCCAacgacaccagcgcattcacaatGGCGAGAAGCCTTATCAATGCTcgcagtgtgggaagagttttataaataagtgtGGTCTCCGAACACACCAGCTCATCCACAATGGAGAGAAGCCACAtcactgctcagagtgtgggaaAAGTTTTATATACAAGAGTGATTTCCAAatacaccagcgcattcacacaggagagaagccgtataaCTGCTCGGAGTGTGGGAAACGTTTTACAACCATGAGTAATTTCCAACGgcatcagcgcattcacacagcaGAGAAGCCACATCACTGCTCACATTGTGGAAAGAATTTTATTCATGAGAATCAACTCCAaaaacaccagcgcattcacacaggagagaagccgtatcagtgcTCAGAGTGCGGGAAGAGTTTTAGTTACAAGAGTCCACTCGAAAAACACCAGCGCAATCACATAGCGCAGAAGCAGATTCAGTGCTTGGTGTGGACAGAGATTCAGTTATTTAGAATTGAAGATACACAAGTGGACCTACATGGAGCTATCAGTTTGTAATGCATGAACTCTAAATTaagttttataattattataattactgtTTAAACAAATTATGCAGGACTTGAAGTGAGCCAGTACTCACTTGTATGCAGTATTTTGCAccttgttttgttctttttaatagcaaatttctttttttttttcatacccAAACTTCTTGTAAGCTTCTTGCAATACTACACTTTACCCCTGCCTAGCCCCAGAGTCAACTGTCTACACCCAAACTGAGTAAAAGTTCAGACCAGTGTGTATGGAGTATAAGAATCACTTAACACATGCActtaaatggaaaaatagaaaCTAACAAGTGTACCTGGGCTTACGCAGCTGGTGTGGATTAAACtgattgttaaaatgaaagctgaaatgccattaaaaaatacttttaaaaaaagcatcagaTATAAATTGGCCTGAATAGAGTCAGAAGATGACATAACTATACCTTAGAATGACAAGGAGATTAAAGTGAGCCGTATTGCACACATCAACATGTATGCAAGGGCGTTACAGAATGACATAAAcccataaaaatatattaaatctcCTCTCAGCTTGTTTTCAAATATGCTTATAACACTATTAACTGTATCTCCGGCAgtaaattttacattaaaatattaaaatttttatccATAACAGTGTGATATTTTGAAGCTGCTGTTCTTAGAGTTAGAAGTGTCCATACAATAACATT
>XM_034313536.1
AGTAAAATATTATCTCTAAAAAGATCTTTCTTGATCTTTCTTTTCAGATCTCTGAAAAGATATTCTCTCTTAAAAAGAGCAAATAAGGATAACCACAGCAGCAAGATGAAAACGTGGGTTTAATAAAAGCCAGTATATGTTGTGATGTGATTAACAGAATGCTCCAGCAGGCGGCGCTGTAACATTAACTCCGCCTTAAACTGAAAACATGAAGAGGAGCTGCAGGTATTTTCCTCTCTGAGTGAAGAGATTTCTCTCAGATGTAATCATCTTCAGCGTGAAAATATTCCTGACTGGGTTTTATTAAACAGATTTGATCCGTTGTCTGTATTTGAGGATGTTTACTACGTTCTCCTTTGATGCCTGAGAATTACAACCTTTAAGACCAAACCTTATGATGGAATCAGCAGAGGTCCAACCATGCTCTTTTAGAAACCCTCCACACACCCCTGCTCCTGCTGGCTCCCAGCTTTGTAGGGATGTGCAGACAGAAACTTGTACATCATGCTGTGTGGGAAACATCAACCCTGTGGACCAACTGGAACATGTAAAGAAGGATGAACCTGAGGATGAAGGCTATGTCTGTGAAGCAACGCCAGGCCCCGTGGGACACATCACACCTGTGGatgaacagaaatatataaaaaaggaagaacCTGAAGATGAACACTATCTCTGTGGAGAAACATCAGGCTCTGTGGAAAGTGTAGCCCAGCAGAGAGGATTTCAGAGCAAGGATGTAAAAGAGGAAGAATCTAAAGATGAAGACTACCTCTATACAACGACAGTCTTGGAAAAAGATGATGCCCAGTTACAAGTCTTCTCCTGCTTCTGGTGTTCACTTTCCTATACAGCTCAAATTTGCCTCCACAAACACTTCACAAGGTGCCACTCCGAGGAATATGAGAGACTGATAAAATCAGGAGAGGTAATGTATCAGAATCTTATGACAGCAAGAAGCTCCACTATTCATCACACAATCTCTGGTACTCTGCAAAAGCAGAAAGAAGTCCATCAGTGCTTGCAGTGTGGGAAGAATTTTACTGACCAGAAAAATCTCAGAAGACAccagcacattcacacaggagagaaaccacatcactgctcacagtgtgggaagagttttgtTAGACAGAGTGATCTCCAAATACACCTGCGCagtcacacaggagagaagcctcatcagtgctcagagtgtgggaagagtttcgCCCAACACAGTAATCTCCAACGACATCAGCGCATTCATAATGGGGAAAAGCCATAtcactgctcagagtgtggaaagagttttaagCAACAGAGTCATCTCCAGACACATCAGCGCATTCATACAGGAGAGaggccgtatcactgctcagagtgtgggaGGAGTTTTATTCAACAAAGTGATCTCCAaacacaccagcgcattcacacaggagaaagaccttatcactgctcacagtgtgggaagagttttaatcgACAAAGTACTTTCAAAGCACACCAgttcattcacacaggagaaaagccGCATCACTGCTTACAGTGCGGAATGAATTTTGCCCATCACAGTAGTCTCCAACGACACCAACgtgttcacacaggagagaagccgtatcactgttCAGattgtgggaagagttttattcaACAAAGTGATCTCCAGACACACCAGgtcattcacacaggagagaagccgtattactgctcacagtgtgggaagagttttactcgACAGAGTACTCTGAAAGCACACCAGGTCATTCACACAGGACAGACATATGAAttttgttctgtttgtgggaagagttttactgaCCAGAGTACTCACCGACAACACCAATGCATTGATAAAGCGGAGAAGCTACAtcactgctcagagtgtgggaaGAACTTTGCCCAACTGAGCCAACTCCAACGCCACCaacgcattcacacaggagagaagccatatcattgttcacagtgtggaaagacATTTATTGGGAAGAATACTCTTAAAGCACACCAGgtcattcacacaggagagaagccacaTCACTGCttacagtgtgggaagagttttgccCAACATGGTAATCTCCAGCGACACCAACTCATTCACAATGGAGGGAAGCCGTATaagtgctcacagtgtgggaagagtttcgCCCAGCAGGGTAATCTACAACgtcaccagcgcattcacaatGGAGAGAAGCCATattactgctcacagtgtgggatgTGTTTTACCCAACAGAGTAATCTCCAacgacaccagcgcattcacaatGGCGAGAAGCCTTATCAATGCTcgcagtgtgggaagagttttataaataagtgtGGTCTCCGAACACACCAGCTCATCCACAATGGAGAGAAGCCACAtcactgctcagagtgtgggaaAAGTTTTATATACAAGAGTGATTTCCAAatacaccagcgcattcacacaggagagaagccgtataaCTGCTCGGAGTGTGGGAAACGTTTTACAACCATGAGTAATTTCCAACGgcatcagcgcattcacacagcaGAGAAGCCACATCACTGCTCACATTGTGGAAAGAATTTTATTCATGAGAATCAACTCCAaaaacaccagcgcattcacacaggagagaagccgtatcagtgcTCAGAGTGCGGGAAGAGTTTTAGTTACAAGAGTCCACTCGAAAAACACCAGCGCAATCACATAGCGCAGAAGCAGATTCAGTGCTTGGTGTGGACAGAGATTCAGTTATTTAGAATTGAAGATACACAAGTGGACCTACATGGAGCTATCAGTTTGTAATGCATGAACTCTAAATTaagttttataattattataattactgtTTAAACAAATTATGCAGGACTTGAAGTGAGCCAGTACTCACTTGTATGCAGTATTTTGCAccttgttttgttctttttaatagcaaatttctttttttttttcatacccAAACTTCTTGTAAGCTTCTTGCAATACTACACTTTACCCCTGCCTAGCCCCAGAGTCAACTGTCTACACCCAAACTGAGTAAAAGTTCAGACCAGTGTGTATGGAGTATAAGAATCACTTAACACATGCActtaaatggaaaaatagaaaCTAACAAGTGTACCTGGGCTTACGCAGCTGGTGTGGATTAAACtgattgttaaaatgaaagctgaaatgccattaaaaaatacttttaaaaaaagcatcagaTATAAATTGGCCTGAATAGAGTCAGAAGATGACATAACTATACCTTAGAATGACAAGGAGATTAAAGTGAGCCGTATTGCACACATCAACATGTATGCAAGGGCGTTACAGAATGACATAAAcccataaaaatatattaaatctcCTCTCAGCTTGTTTTCAAATATGCTTATAACACTATTAACTGTATCTCCGGCAgtaaattttacattaaaatattaaaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313534.1 False 2647 mRNA 0.41 7 20593444 20599093
XM_034313535.1 False 2632 mRNA 0.41 7 20593441 20599093
XM_034313536.1 True 3408 mRNA 0.42 8 20593509 20611269

Neighbor

gene id symbol gene type direction distance location
LOC117599679 LOC108258211 coding downstream 1655 20584667 ~ 20591786 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding downstream 18187 20566946 ~ 20575254 (-)
LOC113524747 LOC108258215 coding downstream 155967 20425285 ~ 20437474 (-)
trnae-uuc_16 NA coding downstream 169859 20423511 ~ 20423582 (-)
trnae-uuc_15 NA coding downstream 171515 20421855 ~ 20421926 (-)
LOC113524752 NA coding upstream 2453 20613722 ~ 20653212 (-)
LOC113524743 LOC108258194 coding upstream 130801 20742070 ~ 20750140 (-)
trnae-uuc_17 NA coding upstream 139231 20750500 ~ 20750571 (-)
LOC117595662 LOC108258028 coding upstream 373919 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 384532 20995801 ~ 20999074 (-)
G298823 NA non-coding downstream 92301 20492009 ~ 20501140 (-)
G298801 NA non-coding downstream 163233 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 202724 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 345526 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 347039 20243428 ~ 20246402 (-)
LOC117599711 NA non-coding upstream 34120 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 64774 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 94208 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 143703 20754972 ~ 20888652 (-)
LOC113525588 NA non-coding upstream 321334 20932603 ~ 20947358 (-)
LOC117599698 NA other downstream 151149 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 214536 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 215065 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 223162 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 227890 20365285 ~ 20365551 (-)
G298875 NA other upstream 44730 20655999 ~ 20664540 (-)
G299022 NA other upstream 461657 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 981005 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1360812 21972081 ~ 22067610 (-)
G299449 NA other upstream 1384845 21996114 ~ 22000833 (-)

Expression


Co-expression Network