LOC113524752


Basic Information

Item Value
gene id LOC113524752
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20613722 ~ 20653212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313607.1
GCCTGCTGGAGGAGTCTGAGTTTTGCTGCAGCTCAGGTCGAGGCTCTAGTTCCTCAGCTGTATACTGATGCAGTCCACGGACTCGTGATTAACAGCTTCTTCACTGAGAATTATGACTGTTTCGACCTCCTGATAACCCCTTAAATGGACTCAGCAGATGTTCAAATGTGCTTTTCTACAAAACCTCCACGCATTCCTGTTCCCGCTGGTTCACAGCTTTATGGAGATGTGCAGACAGGAACGTGTACAGCTTCAGGTGGAGGGACAGCCAGCTCTGTGGGACACATCACACCTGTGGCCCTTCAGAAAGatataaaaaaggaagaacCTGGAGATGGCGACTACCTCTGTGGAGGACCATCATGCTCTATGGGAGACATCACAACTGTTGACCAACAGAAACATGTAAAAAAGGAAGAACCTGAAGATGAAGCCTACCTCTGTGGAGGGACATCCAGCTCTATGAAACATGTGGTCCAACAGAAGAAACGATTTCAAAGgaggaatttaaaaaaggaagagTCTGAAGATGAAGACTACCTCTGTACAATGGAAATGGATGATGCACAATTACAAGTCTTCTCCTGCTCCTGGTGTTCCGTTTCCTATCCATCTCAAATTTACCTCCATGTGCACATCAGAAAATGCCACTTTGAGGAATATGAGAGACTGCTAGAATcaggagaaataaaatctgAGAACTGTATTCCCACAAGAAGCTCCAGTATTCAGCTACTCTGTGGTTCTCTCAACATTAACACATCTAATCAACAAGAGCAGAAAGTAGTCTATCcttgctcacagtgtgggaagagttttactgaCCAGAAAAATCTCCTGAGACATCAGGACATTCACACAGGAGTGAAACCACATCACTGCAaagagtgtgggaagagttttactcacCAAGGTGCTCTTCAAATACACcggcgcattcacacaggacagaggccatatcactgctcacagtgtggaaaaagTTTTATTCATCAGTGTTCTCTTCAAACACACCAGcgtattcacacaggagagaagccttatcactgctcacagtgtggcaAAACGTTTACTGGAAAAACTCCTCTTAGAGTacatcagcgcattcacacaggagagaagccgtatctgTGCTCACAATGTGGGAAGGGTTTTAGCAATCTCGGTAATCTCCAaagacaccagcgcattcacacaggtgTAAAGCCGTATCACTGCACGCAGTGTGGGAACTTTATTCAAGAGTATGATCTCCAAAaccaccagcgcattcacactggagagaagccgtatcactgctcagagTGCGGGAACAGTTTTACTCGACAGAGTGACCTACAGCAACATCaacgcattcacacaggagaaaagccgtatcactgctcagagtgtgggaagagttttttTCGACAGAGTAATCTCATACGACATCAGCGCACTCACATAGCACAGAAACCAATTCAGTGCTTACAGTGTGGAAGGAGATTTACTTATTCAGGTGCATTTAACCTACACAAGTGTCCCAACAAGGAGCCATCAGCTTGTGATGCATGGTGCACTAACCGGAGAGCTTCTGTTCCGCATCCTGCTTCTCTGCCATCAACCACCAGTGACAGGAGTCCATCAGGGGCGGTCGAGCTCGGGGAGCTGCAGCAACCAGAAGTGTCGGCAGTGCTCCTCAGGTGTCAGGCCAGTGAGTTGCAGGACTGCCCACTTGACGCTAGATTACTGCAGGTGTGTCCATGGAGGCAGCTGCTGGGAGACAAGCTGGGCTTCCCCCGATGGCAAGGGGAGGAGTCACAGAGCCCATTCTTCCTTCGGCCATACACACGCAACTGCTGCATGCTTGAAGAGCTCCAGGACATGAGTGCCTGCTGGCTCAACCTGCTCCTGCACGAGGGGTCTGAAGTGCAGCTGCTGCTCGTTGTGCAGGTCGAGGAGCACTTAGTGTTGGGTTTAGTGGAGAATGAATTACAACCTTTAAGACCAAACCTTATGATGGAATCAGCAGAGGTCCAACCATGCTCTTTTAGAAACCCTCCACACACCCCTGCTCCTGCTGGCTCCCAGCTTTGTAGAGATGTGCAGACAGAAACTTGTACATCAGGCTCTGGGGGAAACATCAACCCTGTGGACCAACAGAAACATGTAAAGAAGGATGAACCTGAGGATGAAGGCTATGTCTGTGAAGCAACGCCAGGCCCTGTGGGACACATCACACCTGTGGatgaacagaaatatataaaaaaggaagaacCTGAAGATGAAGAATATCTCTGTGGAGAAACATCAGGCTCTGTGGAAAGTGTAGCCCAGCAGAGAGGATTTCAGAGCAAGCATGTAAAAGAGGAAGAGTCTAAAGATGAAGACTACCTCTGTACAACGACAGTCTTGGaAATGGATGATGCTCAGTTACAAGTCTTCACCTGCACCTTGTGTTCACTTTCCTATACATCTCAAATTTATCTCCACAAACACATCAGAAGATGCCACTGTGAGGAATATGACAGACTGATACAATCAGGAGAAATTAAATATGAGAATATGACATCCACAAGAAGCTCCAGTATTCAGAAAACAATCTTTGGTGATGGCAACAGTAAGACATCTAATGAAGTGCAGAAGGCAGTCCATCCCTGTTCTCAGTGTGGGAAAGGTTTTACTGACCGGAGTAATCTCAGacgacaccagcgcattcacacaggggagaagccgtatcactgcacACAGTGtgagaagagttttattcaCCGGCAAGGGCTCAAATCACAccagctcattcacacaggagagaagccttTTCAGTGCTTACAGTGTGGGAAGTATTTTTCTAGACAGGGTGATCTCCAAATACACCAACGCATtcatacaggagagaagccgtaccattgctcacagtgtgggaagagttttaaacGACAAAATAACCTCAAAACTCACCAGGTAATTCACAATGGAGTAAAACCATATTATTGCTCAGAGTGTGGGATGAGCTTTCATCAACAGAGTCATCTCCGGacacaccagcgcattcacacgggAGAAAAGCCGTATCAGTGCTCACaatgtgggaagagttttaatcgACAGAGTCATCTCCGGACACACCAGCGCGTCCACGCGAAACAGAAAGCACATCACTGTtcagagtgtgggaagagttttattcGAAAAAATGAGCTCCAAACACACCTGCGCCTTCACACGGGAGAGAAGCCATATCAGTGCTTGCAGTGTGGGAAGAATTTTACTGACCAGAAAAATCTCAGAAGACAccagcacattcacacaggagagaaaccacatcactgctcacagtgtgggaagagttttgtTAGACAGAGTGATCTCCAAATACACCTGCGAAGTCACACGGGAGAGAAGCCTCAtcactgctcagagtgtgggaagagtttcacCCAACACAGTAGTCTCCAACGACATCAGCGCATTCATAATGGAGAAAAGCCATAtcactgctcagagtgtgggaagagttttaagCAACAGAGTCATCTCCAGACACATCAGCGCATTCATACAGGAGAGaggccgtatcactgctcagagtgtgggaGGAGTTTTATTCAACAAAGTGATTTCCAaacacaccagcgcattcacacaggagaaaggccttatcactgctcacagtgtgggaagagttttgccCAACACAGTAGTCTCCAGCGACACCAACgcgttcacacaggagagaagctgtatcgctgctcacagtgtgggaagagttttattcaACAAAGTGATCTCCAGACACACCAGCGCatccacacaggagagaagccatatcactgctcacagtgtgggaagagttttgccCATCCCAGTAGTCTTCAACGGCACCaacgcattcacacaggagaaaggCCGTATCACTGTTCACaatgtgggaagagttttaatcgACAGAGTACTTTCAAAGCACACCAgttcattcacacaggagaaaagccaCATCAGTGTTCAGAGTGTGGAATCAGTTTTGCCCATCACAGTAGTCTACAACGACACCAACGTgctcacacaggagagaagccgtatcactgttCAGattgtgggaagagttttattcaACAAAGCGATCTCCAGACACACCAGgtcattcacacaggagagaagccctataactgctcacagtgtgggaagagttttactcgACAGAGTGCTCTGAAAGCACACCAGGTCATTCACACAGGACAGACATATGATGTTAGGATCATgccaAATCATAACACTGTAGACCCCAAAGACCTTATAATGGAATCAGGAGAGTCCAGACTGTGCTCTTTTACAAAACCACCACACAGTTATTCTCCTACTAGCTCACAGAGCTTGCGGCAGATGTACAGCATGGTGcgctcctccccctccaccacctgggacaacaTGGCCCCCAAGCCTCTATCCAACACATCTGTCTGCCAAACAAAGGGGAGAGAGAAGTCAGGAATCTGCCTCGCTCCACCTCTATCCATTTGCCTTACCTCATTGTTGGCGTCCCCAACTCGCCATGCGATCTCGAATGACCAATGCCACATGATGGAGGTGGGAGCGTTGGTCCGGGTCCTAGACGCAATGCCAGCCGCCCCCGATCGAGTgaggacatactgtatactgCTTTGTGGAGATGTGCGAACAGAAGCTCATACAGATTCAGTTGGAGGGACATCAGGCTCTGTGGGAGACATCAGCCCCATGCAccaacagaaatatataaaaaaggaaGAGCCTGAAGCTGAAAGCTATGTCTGTGAAGCAACATCAGCCTCTATGGAAGACATCACACCTGTGGatgaacagaaatatataaaacaggAAGAACCTGAAGATGAAGACTACCTCAGTGGTGGGACATCAAGTTCTGTGGAAAACGTAGACCAACAGAGAGAAGAATTTCAAAGCATGCATGTAAAAGATGAAGACTACCTCTGTACAACGACAGTGTGGGAAATGAATGATGTCCAGTTACAAGTCTTCTCCTGCTCCTGGTGTCCACTTTCCTATACATCTCAAATTTACCTTCACAAACACATTAGAAGATGCCACCTTGAGGAATATGAGCGACTCATAAAATCAGGAGAGATAAAATATGAGAATCTTATTACTGCGAGAAGCTTTAATATTCCAAGAACCATTTCTTGTGCTCTCGACAGTACCGCCTCTAATCAACCAATGCAGAAAGAAATGTATCTGTGCCCACAATGTGGGACGAATTTTACTGACCAAACAAGTCTCAGACAACATCAgtacattcacacaggagagaagccacaTCGTTGCACAGAGTGCGGGAAAAGTTTTTCTCGACAGTGTTTTCTCAAACagcaccagcgcattcacacaggtgAGAAGCCGTATCATTGCtcagagtgtgggaagagttaTTCTCGACAGAGTGTTCTCGaacaacaccagcgcattcacacaggtgAGAAGCCATATCATTGCTCAGAGTGTGGTAAGGCTTTTGCCCAACATGGTAGCCTCCAACAACATCAACGCATTCATAATGGAGAAAGGCCTTAtcactgctcagagtgtgggaaACGTTTTGTTCGACAAAGTGCTCTTCAAATACACCttcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagaatTTTATGCGACAGAGTGATCTCCTAatacaccagcgcattcacacaggagagaagccgcaTCACTGCTCAGAGTGCGGGAAGAATTATTCTCGACGGAGTGTTCTCGaacaacaccagcgcattcacacaggttTGAAGCCTTATCACTGCTCGGAGTGTGGCAAGTGTTTTGCCCAACATGGTACTCTCCAAAGACATCAGCGCATTCACAATGGAGAAAAGCCATATCACTGCTCGGAGTGTGGAAAGTGTTTTGCCCAAAACGGTACTCTCCAACGACACCAGCGTGTCCACAATGGAGAAAACTGCACTGAGATTTATACAACACCAATGAATTCAAATAGCGTGGAAACTGCATAGAAACATGGATAAAGATTTACTTGTTCATGTGCAGTTTACATAGACAAGGGCTTCAAAATAGAGCCATCAACTTGTGATGTGTGActaaacaaaacactgattaaGCTGCCcttagttttcatttatttaagttATGCCGATAAatgtatttacaatatataccGGGTGGCCCAAATGTCTCCAAACATAGGGGAAATtgacactttttagca

Function

GO:

id name namespace
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0051213 dioxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313607.1 True 6227 mRNA 0.46 23 20613722 20653212

Neighbor

gene id symbol gene type direction distance location
LOC113524753 NA coding downstream 2453 20593441 ~ 20611269 (-)
LOC117599679 LOC108258211 coding downstream 21936 20584667 ~ 20591786 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding downstream 38468 20566946 ~ 20575254 (-)
LOC113524747 LOC108258215 coding downstream 176248 20425285 ~ 20437474 (-)
trnae-uuc_16 NA coding downstream 190140 20423511 ~ 20423582 (-)
LOC113524743 LOC108258194 coding upstream 88858 20742070 ~ 20750140 (-)
trnae-uuc_17 NA coding upstream 97288 20750500 ~ 20750571 (-)
LOC117595662 LOC108258028 coding upstream 331976 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 342589 20995801 ~ 20999074 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding upstream 440265 21093477 ~ 21112429 (-)
G298823 NA non-coding downstream 112582 20492009 ~ 20501140 (-)
G298801 NA non-coding downstream 183514 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 223005 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 365807 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 367320 20243428 ~ 20246402 (-)
G298878 NA non-coding upstream 22831 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 52265 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 101760 20754972 ~ 20888652 (-)
LOC113525588 NA non-coding upstream 279391 20932603 ~ 20947358 (-)
G298934 NA non-coding upstream 296630 20949842 ~ 20950072 (-)
LOC117599698 NA other downstream 171430 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 234817 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 235346 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 243443 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 248171 20365285 ~ 20365551 (-)
G298875 NA other upstream 2787 20655999 ~ 20664540 (-)
G299022 NA other upstream 419714 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 939062 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1318869 21972081 ~ 22067610 (-)
G299449 NA other upstream 1342902 21996114 ~ 22000833 (-)

Expression


Co-expression Network