LOC117599724


Basic Information

Item Value
gene id LOC117599724
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21574583 ~ 21578269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313612.1
AATGGCGGACACGAACACATTCTGTTCTATTTACACAAtatcaccacagcactgaaatcatatttacgcgctaattatttcatttctccCCCGTTTTATTGAAGTTTATTGAAGTTTAAGATTAGAAAGCTAATATAAAGTTTGTTGTTAACAGCGTCCTTGCAGCAATAAACCGTCTCGCgcttcagcagcactgagctACACAGGACACAGTGGAGCTgctacgtgattggctgatgctgCAACAGAGCAGTAACGTGATTGGTTCCCGCGCCAAATGATTGACACTGGGCCCGCCTCCGATATGGCCGAGTTAAAAAAGGAACGGATTTAGAACGTAAAGCTGTAAGAGATGGGGGACTGTGACGTCACAAGAGGAGGCTATGACGTCACAGGAGGAGAAGGGACAAAAACCCTGATTTCAGGTGTTTAGTTCAGTTACTGTATTTTACAGATCACACGCCAGagAAAGCAATCCGAGAGAAACTACTGGATTCATACCCACGTGATTCAAAGATgagtgagaagaagagaagtAGCCAGAGAGGAACAGCTGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGATGAGGAATGGAAGGCTGTGACCAGGGACATGAAGAAGAAGgtCACAAAGTTGGAGTTTGCGGTTCTGTGCACGAAGATCGCGACGTCAGCGGCGTCTTCTGCCATCAGGCGTTTACTGACGCCTCTCATCGAAAGCTTCGGGATCGATTTGATTCTCCAGGCGAAAGACAACCTGAAGAAAAGGGCGGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACGCCTCAGCTCAAAGatcGCCTATGGAGATGTCTGATTTCATCTGTCAGCTCGTTCAGAGAATCGCCACTCAGACCAAAGCTGCGATGCTGGAGGCGATCCGGAGAGTGGCATCAGGACGAAGGGCGATCTGCTCGGCGAGTGCTTCATCATCTGCAGAAGATCAGATCTCACAGCCAGATGATCTCAGCATGGCATGCACTAATGAGATCTGTGAGAAGATCTTGGCCCTGTATCACTCTGACGACTTCGACAGACCTGGAGGAGAGAAAACTTCAGGAACGAAGCTAAAGTCCCACCAGGAGGTCCATGGAATAATGAAGGGCTTGGAAGAAGTTGTCTCCATCAGCAAGTCCTCTTTCGAATTAATGCTAAAATCCTTGAGCCCTGATTCGGTCCCTGTGACGACTAAAGTGATGGCTCCTGATTGTGCTTCATCAGCTCCTAATGCTGAGAGGCTTTTCAGTGATCAGTTTCTGAGCAAAGCCACACAAGAGGTCAGAAAAGTTCTTCTGAAAACAGAGGAAACAATCGCTGCCTCATTGTCGTCCCAAACCTCAGTCCCTGTCCGCAGTGAGACAGAAACGAATTCCCTGATGGAGGAGGTCGAGAGCACAGCCTCAGAAATTCTGTgggaattattatttatacttatacaGTCACTGAGTAAAAGTTCATCAGGCGTCAGCAGCAACGACGCTGACCAGCCTGGTCCAGAAGATGAGCGGAAGAACTTCCTCTCTGGTGCTCAAAAGATCCACGAGAACATCTTCAAGCAGGTGTTTATGTTCCTCTCTGGGCGGAAGCGAGCAATTTCTGAAAAGAACAAGTTGTTCTTGGACATCTGTCCTAAAACTGCTGCTGAGGTCGAGGTCAGGTCGGAGAACGTCCAGgagcctgctgctgctgctgaacgTTTCCTCGATAAAGCCATTCTGGTTGCGAGTGAGATCCTAGAGAAGTGGTTATCTTCTCACATTTCCACAGGGTCATTCAGTGGGAAAGATTCGAGTTCCAGCACAGAGTCGTCACCGACGGCGTCAGTAGATCTGGATCGAGTCACTGCTGAAAGCGTAAACACGGTGATCAGTGGAGTTGCTCTCGAGAACGGAATAACTGACGTGGAAAACGGATCGGAAGCTCGGGTAGGTGAAGCTCAGGTGAGTGATGCTGATGCTCGCTCAGCTCCCTGCTCAAAGAACTTCTCAGACGTTTTCACGAAGCTCCGAAGTCTGATTGGACTTGGAGATAAAAAGAGACAGTCATGCTCGTGCCTGAagaatgcagcagcagcagcagaagtgaCTGATGCTCAGAGCCTCGTGTCCGTCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTGCACTGAGGAGCTCATCGAGAAGAACGCAGATTTATTTCTGCGTGACGAGCGTCACGAGCTGCTGGCCAAGTCCAGCTCTCCTAAAGCTCCTCAGCTCAGACGGTTTGCGTTCCTGCGGCCGCGTAAATCCGATCAGCGGATTGTTTCTGAGGTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313612.1 True 2400 mRNA 0.49 7 21574583 21578269

Neighbor

gene id symbol gene type direction distance location
LOC117599736 NA coding downstream 31 21572325 ~ 21574552 (-)
LOC113524833 ddhd1,LOC108412684 coding downstream 207038 21353629 ~ 21367545 (-)
LOC113524818 LOC108257685 coding downstream 222311 21343168 ~ 21352272 (-)
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding downstream 237644 21333265 ~ 21336939 (-)
kcnk10a LOC108257634,LOC108413877,LOC103032675 coding downstream 327398 21219886 ~ 21247185 (-)
crip2l LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639 coding upstream 47591 21625860 ~ 21640993 (-)
LOC113525508 NA coding upstream 106825 21685094 ~ 21689308 (-)
LOC113525042 NA coding upstream 145466 21723735 ~ 21728414 (-)
trnav-uac_10 NA coding upstream 153920 21732189 ~ 21732261 (-)
nt5c1bb LOC108257680,LOC102795473,LOC100693789,LOC102194616,LOC101069542,LOC101468566 coding upstream 166667 21744936 ~ 21750986 (-)
LOC117599743 NA non-coding downstream 72871 21500657 ~ 21501712 (-)
G299070 NA non-coding downstream 294792 21259456 ~ 21279791 (-)
LOC117599741 LOC108263642 non-coding downstream 388951 21181940 ~ 21185632 (-)
G299032 NA non-coding downstream 442581 21115632 ~ 21132002 (-)
G299026 NA non-coding downstream 491757 21082521 ~ 21082826 (-)
LOC117599744 NA non-coding upstream 18713 21596982 ~ 21598054 (-)
LOC117599742 NA non-coding upstream 44967 21623236 ~ 21624299 (-)
G299353 LOC108265589 non-coding upstream 114204 21692473 ~ 21695643 (-)
G299359 NA non-coding upstream 136634 21714903 ~ 21716462 (-)
G299366 NA non-coding upstream 164910 21743179 ~ 21744770 (-)
G299022 NA other downstream 500907 21072926 ~ 21073676 (-)
G298875 NA other downstream 910043 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 1132291 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 1195678 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 1196207 20378305 ~ 20378376 (-)
LOC117599725 NA other upstream 14005 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 393812 21972081 ~ 22067610 (-)
G299449 NA other upstream 417845 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 446347 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 491659 22069928 ~ 22082320 (-)

Expression


Co-expression Network