LOC117599736


Basic Information

Item Value
gene id LOC117599736
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21572325 ~ 21574552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313692.1
GAGTGAGATGCTGCTCAGAAGGTTGTCCACAGCAGACTCCTCGAGGTGCTCATTAGAAGACGCGCAGAGTGCCGTCAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGATGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAAAACCAAGGAACATCTTGAGAAAAGTGCGAAGTCTCCTTCAGGCGTTTTTCTCCAAGGCATCTGAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGCTGACAGCTCCACCTGCGGTGAAGAACGATGATGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAAGCGCAGCTCAGGAAAGTGGCGTCCGCTTTAAATCTGCAGATCGATTCTACAGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCTGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCACTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGATGATGAAAGGACAGACGCGTCAGCACAGTCAGAGAGGGATGAGGATCGTGTCACTCCCATCTACATCAGTGAGGATGGCACGGTTCATGAGCTCACAGAGCTGGAGGATCTTTCTCTGGAGGAGATGATACATCAACGATCACGTGCTATAACGGACGTGATCGCAAAACTCCTCCTGAGGAACGTGGATAGGGCAGGAGATGTTGGCCAGTGTTCATCAGATTCTGTTCTGGGGAGAGGGAACATCACGTTACGCTCCATCACGTTACCTTCTGAGTGCGTTTACACGTTTGCAGAGGAGTCCATCAAGGCTTTACTGCAGAATGTGCTGAACGCCGGGCCGAGCGCAGGAGACGAAGCTCAGGAAAGCAGCTTGGTGGACAAATCAACCGGTTGTCCTTCTGCTACAGCGCTCGCACGTGAACTCGAGGACGCTGGGACTTCCTCTGTGTGTCGTATTAACGGTTTGCATCCTAAGTCTCCTCAGCTATCAGCAGCTTCCTCCAGCTCGTCTCCTCGTGCTGACGTGGAGGAGACTCGAGAACATCTGAGCCTCACCGATCAGCAGAATCGAAGTGGAAGCGATGGACGCTCCTCACATCCAGCAGCTGAGGATCAGGAGAAGAAAACGAGGCTTGGACTCCTCACAAGGAACGGGCGTGTGATCAGACGTGGCGTTAAGTGTCCCAAGAAGTGGAAGAAGAATCAGAGCAGAGTTCCTCTGACAGGCGATGACCAGCCGACCCCTTCCACCTCCGCAAATCTTCACAGCTCTTCACACAGAGAATCGAAGGCCTCGGGGTCGGTCTTCAAGAACGCTCGCAGAAGGCTGGGCAGGATCTTCTCCAACATCTCCAAGACCTTCACCAGCTGCTCCAACCCTGAAACCGCTCCGTAAACTCGTCAGCGTCGGCCTGAGCCCGGTGACCTTTAACCGAGTTACCGTGGTAACAGGCACCAGCGacggaaaacaaacaaacaaacaaaaacaaa

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313692.1 True 1731 mRNA 0.52 3 21572325 21574552

Neighbor

gene id symbol gene type direction distance location
LOC113524833 ddhd1,LOC108412684 coding downstream 204780 21353629 ~ 21367545 (-)
LOC113524818 LOC108257685 coding downstream 220053 21343168 ~ 21352272 (-)
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding downstream 235386 21333265 ~ 21336939 (-)
kcnk10a LOC108257634,LOC108413877,LOC103032675 coding downstream 325140 21219886 ~ 21247185 (-)
trnae-uuc_18 NA coding downstream 362072 21210182 ~ 21210253 (-)
LOC117599724 NA coding upstream 31 21574583 ~ 21578269 (-)
crip2l LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639 coding upstream 51308 21625860 ~ 21640993 (-)
LOC113525508 NA coding upstream 110542 21685094 ~ 21689308 (-)
LOC113525042 NA coding upstream 149183 21723735 ~ 21728414 (-)
trnav-uac_10 NA coding upstream 157637 21732189 ~ 21732261 (-)
LOC117599743 NA non-coding downstream 70613 21500657 ~ 21501712 (-)
G299070 NA non-coding downstream 292534 21259456 ~ 21279791 (-)
LOC117599741 LOC108263642 non-coding downstream 386693 21181940 ~ 21185632 (-)
G299032 NA non-coding downstream 440323 21115632 ~ 21132002 (-)
G299026 NA non-coding downstream 489499 21082521 ~ 21082826 (-)
LOC117599744 NA non-coding upstream 22430 21596982 ~ 21598054 (-)
LOC117599742 NA non-coding upstream 48684 21623236 ~ 21624299 (-)
G299353 LOC108265589 non-coding upstream 117921 21692473 ~ 21695643 (-)
G299359 NA non-coding upstream 140351 21714903 ~ 21716462 (-)
G299366 NA non-coding upstream 168627 21743179 ~ 21744770 (-)
G299022 NA other downstream 498649 21072926 ~ 21073676 (-)
G298875 NA other downstream 907785 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 1130033 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 1193420 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 1193949 20378305 ~ 20378376 (-)
LOC117599725 NA other upstream 17722 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 397529 21972081 ~ 22067610 (-)
G299449 NA other upstream 421562 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 450064 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 495376 22069928 ~ 22082320 (-)

Expression


Co-expression Network