LOC113524822 (LOC108257668,LOC108261406,LOC108270747,LOC108273546,LOC108263642,LOC108274210,LOC108270753)


Basic Information

Item Value
gene id LOC113524822
gene name LOC108257668,LOC108261406,LOC108270747,LOC108273546,LOC108263642,LOC108274210,LOC108270753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21189423 ~ 21197043 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313693.1
gaggaggatctgcagagtgtcagagagggagcactgaagatcacactgcacgtcctgaagaacatgaaccacacagatctcgctaacacactgcatgACAagCTGCACCAGCAAACATTAAAATCCAatttgagagagaaatgtaaaataattaatgaaggaatctcacaacctggaagctcagcacttctgaatgagatctacacggagctctacatcacagagggttggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgacctctttaaagacaagtccatcagaactgtgctgactaaaggagttgctggaattggaaaaacagtatctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcatgACATCTTCtccatgtttccacttccctttagagagctgaatctgatgaagcagaaaaatctcagtctgatgaatcttcttcatcactttttcccagaaatgagaaaactagaATTAACAGACTGCAAGTCCTACAAAGTGATGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagactgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgttctcctctggataacctctcgaccaggagcagtcaatcagatccctcctgagagTGTAGACCTGGTAACAGAGGCACGAGGGTTCattgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagaagctggccaataaaatcgtcacacacatgaagtcatcaagaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgtgtgaagcagagagtggagagatccccaagactctgactcaaatgttcacatgcttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaggATCTGAGAGaatgtggcattgatgtcacaGAAGcttcagtgtactcaggagtgtgtacccagatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgcatttctgtCCTTCATCAGCAGAAACATAACAGAACAACCAACtactgatctgtctgatcttttcagcAAGTCacacatgtctgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctggacctgttcctccgcttccttctgggtctctctcTGGAGTCCAATCAGGCTCTCCTCCAaggcttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtgaagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcgttctctagtgcaggaagtacaaacttaCCTGAACAGAGAATATTATTGTAGTCTCAGTGGAACCAgcctctctcctgctcagtggtcagcttttgtgtttgtgatactgaactcagaacagcTGCTGGATGAGTTTAATTTGCGTAAATATGATCCATCAGatgaatgtcttctgaggctgctgccagtggtcaaaacctccagaaaagctgagctgtgtgtgtgtaatctgacagaggaaagctgtagaggtCTGTCCTCAGCTCTCAGCTCAAACttctccagtctgagagaactggacctgagttacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagaaactggaACTACGTGGGTGtgatctgacagaggaaagctgtagagttctttcctcagttctcagctcaaactcctccagtctgagagaactggacctgagttacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgagGGTATAACACAAAGACTTCTCTGGGTTGGGAATGAGGAAGTGGGAGGCAACTCCCCCAGAGGAAAtctgccacagccatctgcacCACCCCGGCTTGTGAACCACCTCAAACTTAAATGGCTGAAGTGCCAAATCCCAACAGGTGATCCACGTGTTGGCATCTTTCATGCAGTGGAGCCACTGGAGCGGGGCATGGTGTGAACAGAGGGAGAAGGCCCATCCCAACAGATAGTACCGGAGGGGGAGGACTGCCCATTTGATGGCCAGGCACTCCTTCTCTATTCGTTCTGTACTTAGTCGCATGGAGAGCTTGCGGCTGATGTACAGCATTGGGTGGTCCTCCACTTCCACTGCCTGGGACAACAAGGCCCCCAGTCTCCTGTCTGACATATCTGTATGTAaaacaaaagggagagagaaatcagGAGCATGTAAGAGTGGTCTGCCACAGAGTGCAGCTTTTACTTGAGCAAAAGCCTGCTGGCACAACTCAGTCCAATGGACTGGATCTGGtgctccctttttagtgagatcagtcagcAGGCTGGTGACATCCAAATAATTAGGCACAAACCTACGATAATAGCCAGTCAGATCCAGaaactgtctcacctcctttttggtcttgtGTCTCGGGCAGACCACAAtcgctgctgtcttatcaaCCTGGGGATGCACTTGCCCATGACCCCAGTGGAAACCCAGATACTGTACTTCCATCTGCCCAATCACTTTGGGTTTGACGTGAGCCCTGCCCACCTCAGTGACCTCAGAACAGCCCTCAGATGCTGAATGTGCCACTGCCAATCATTGCTGTAGATAATATCATGTAGGCAGCAGCATAAGCAGCATGTGGACAGAGGATTCTTTCCAGGAGTCGCTAGAATGTCGTGTAGTCCAGTAGTACTAGCACCAGGCGATGCTATCGTGCAGTCCAGTCCAAGGGCCTGGCGAGGTCCATCCCAATTCTTTCAAAGGGGACCTCGATTAATGGAAGTGGGTGCAATGGTGCTTTGGAGTGGCTGGCAGATTCATCAGCCGACATTTGTGACTTGACGCACACCACCTGCGAACCGTGAATGCCTGGCCAATACAAGCAGGCCATGAGCCAGTTCAGTGTTTTGTTCTGTCCTAAGTGCCCTGCCATCTAATTATGGTGAGCCGCCTGGAATAACCCTTCCCGATGGCTCTTTGTGGCCAACAATTGGGTCATTTCTTATTGCTtttgagtgtcctgcatcactCAACATAACCTATTCTTTATAATTGAAAAATAAGCATGGGAGAGCACAACTTtaggctgaatttgctgaccatcAACTACTCTCACTTGGTCGAAGGCATGCCTCAGGGTCTCGTTGTGCGACTGCTCCAAGAGGGGAGGAGCGGGGCCCTCCCCACTCTTTGTGCCCCCCTGACGTGGAGCTGACATCAACAGCCCCGGCACTGCCTCACAAGCCAATGCTGCACACATTCCACACTGTCTCTCactactgcaggacccatccacaaacatttcttttgctAATGCTTGGAACCCTAGACATCTTTCCCCggattagtggatgggtgaggcgagGACTAACCGGAACCTCCACTATATTACTTTGCTCACAGAATTTGATGACAACTGGCACCAGTAGATATTCCTGAACATCCCTGTTCACACACATCACCTTCCCCAATGCCTCACCTTGTACCACGCATTGGTGAATTGAGGTTTGGTTACAGCCCGAATCCACCAATGCATGGTATGTCCCCCCTGGAACGCTCACCGGTATACAGTATGTCCCGGCTTGATCGGGGGCGGCCTGCGGCATGTCGGGGATCTGGAATAATGCCCCCACCTCCATCAAGTGGCATTGGTCCCAGAAATGCCCGGGCTCCCCACAATGTCAACACACCGGCCCAGGCTTTACTCCCACACCTGCGGCCCCGGATTCACCCACCTGGGGGCTAGAGGAGACAGACATAGGGAAAGAGTGAGGAGGAGGACAGCTGGTCCAGGCAGCTGGTTTCAGGGGAATTGGCCCCCGTTTCCATGGCGTGGGGACGGGGAAAGGGCAGGGgtgaggaggagggggagaggtatgagaaagagagagggagagaaaagggaAGGGTTCGCCTGCCCATGGGTATGCCACCACATGGTCCTCTGCCAGCTGGACTGCCTCATCTAGTGAAGCCGGACACTGGCATTGGACCCAGTTCCCTCTATTCGGCTGTTCCCTCCGGTAGCCTGGCTATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313693.1 True 4463 mRNA 0.50 5 21189423 21197043

Neighbor

gene id symbol gene type direction distance location
LOC113524826 LOC108270753,LOC108273691,LOC108261257,LOC108257668,LOC108260129 coding downstream 17706 21135577 ~ 21171717 (-)
LOC117599722 LOC108257668,LOC108270747,LOC108261406,LOC108263642,LOC108273692,LOC108270753 coding downstream 63339 21119948 ~ 21126084 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding downstream 76994 21093477 ~ 21112429 (-)
LOC113525589 LOC108258028 coding downstream 190349 20995801 ~ 20999074 (-)
LOC117595662 LOC108258028 coding downstream 198752 20985188 ~ 20990671 (-)
trnae-uuc_18 NA coding upstream 13139 21210182 ~ 21210253 (-)
kcnk10a LOC108257634,LOC108413877,LOC103032675 coding upstream 22843 21219886 ~ 21247185 (-)
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding upstream 136222 21333265 ~ 21336939 (-)
LOC113524818 LOC108257685 coding upstream 146125 21343168 ~ 21352272 (-)
LOC113524833 ddhd1,LOC108412684 coding upstream 156586 21353629 ~ 21367545 (-)
LOC117599741 LOC108263642 non-coding downstream 3791 21181940 ~ 21185632 (-)
G299032 NA non-coding downstream 57421 21115632 ~ 21132002 (-)
G299026 NA non-coding downstream 106597 21082521 ~ 21082826 (-)
G299019 NA non-coding downstream 118312 21070837 ~ 21071111 (-)
G299018 NA non-coding downstream 120485 21068714 ~ 21068938 (-)
G299070 NA non-coding upstream 62413 21259456 ~ 21279791 (-)
LOC117599743 NA non-coding upstream 303614 21500657 ~ 21501712 (-)
G299317 NA non-coding upstream 375267 21572310 ~ 21592447 (-)
LOC117599744 NA non-coding upstream 399939 21596982 ~ 21598054 (-)
LOC117599742 NA non-coding upstream 426193 21623236 ~ 21624299 (-)
G299022 NA other downstream 115747 21072926 ~ 21073676 (-)
G298875 NA other downstream 524883 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 747131 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 810518 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 811047 20378305 ~ 20378376 (-)
LOC117599725 NA other upstream 395231 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 775038 21972081 ~ 22067610 (-)
G299449 NA other upstream 799071 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 827573 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 872885 22069928 ~ 22082320 (-)

Expression


Co-expression Network