crip2l (LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639)


Basic Information

Item Value
gene id crip2l
gene name LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21625860 ~ 21640993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313702.1
AGTAGAACAGCAccagtctctttctctgtctgcttatcacacacacacacacacacacacacacacacacacgcatttacatttatttatttattcatctggtTTAAATATGGCGTCCAAGTGCCCTAGGTGTGAGAAGACGGTGTATTtcgCGGAGAAAGTGAGCTCTCTGGGAAAAGACTGGCACAAATTCTGTCTAAAGTGTGAACGCtgcaataaaacactgaatCCTGGAGGACACGCtgagcaTGATGGGAAACCGTACTGCCATAAACCCTGCTACGCTACACTGTACGGAcccaaaggtgtgaaTATCGGTGGTGCTGGATCGTACGTGTATGAAACACCAGTGACTGAGGCGCagacctccaccaccaccacaccacccAGAGCTGCGGAGAGGAAAACTACAGCACCACCTAGAGGACCAGTGAAGGCTGCCAGTTTCTCATCGTTCTCTGGAGAGCCGAATATCTGTCCCCGCTGCAACAAAACCGTCTACTTCGcggaGAAGGTGATGTCCCTGGGGAAGGACTGGCACAGGCCGTGTCTGCGCTGCGAGAGGTGCAGTAAGACGCTCGCTCCGGGAGGTCACGCTGAGCATGATGGCAAGCCGTACTGCCATAAACCCTGCTACGCTGTCCTGTTCGGACctaaaggtgtgaaCACTGGAGGGATGGGCAGCTACATCTATGAAGAGCCAACCACTGAGCCTCAGCCatgaatccacacacacacacacacacacacacacacacgcacattttttacttttatatatgaTGTAGTGTTCGTGTGAATTCAACACTGATGTCActattacagtattattattattattattattataattattattattataatacagtgttattgtctgtgttaattatttaatgtgagtttatttataaacacTTGCACTGTATTCAATTTA
>XM_034313703.1
AGTAGAACAGCAccagtctctttctctgtctgcttatcacacacacacacacacacacacacacacacacacgcatttacatttatttatttattcatctggtTTAAATATGGCGTCCAAGTGCCCTAGGTGTGAGAAGACGGTGTATTtcgCGGAGAAAGTGAGCTCTCTGGGAAAAGACTGGCACAAATTCTGTCTAAAGTGTGAACGCtgcaataaaacactgaatCCTGGAGGACACGCtgagcaTGATGGGAAACCGTACTGCCATAAACCCTGCTACGCTACACTGTACGGAcccaaaggtgtgaaTATCGGTGGTGCTGGATCGTACGTGTATGAAACACCAGTGACTGAGGCGCagacctccaccaccaccacaccacccAGAGCTGCGGAGAGGAAAACTACAGCACCACCTAGAGGACCAGTGAAGGCTGCCAGTTTCTCATCGTTCTCTGGAGAGCCGAATATCTGTCCCCGCTGCAACAAAACCGTCTACTTCGcggaGAAGGTGATGTCCCTGGGGAAGGACTGGCACAGGCCGTGTCTGCGCTGCGAGAGGTGCAGTAAGACGCTCGCTCCGGGAGGTCACGCTGAGCATGATGGCAAGCCGTACTGCCATAAACCCTGCTACGCTGTCCTGTTCGGACctaaaggtgtgaaCACTGGAGGGATGGGCAGCTACATCTATGAAGAGCCAACCACTGAGCCTCAGCCatgaatccacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: cysteine-rich protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24413 CRIP2_3, CRP2_3; cysteine-rich protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313702.1 True 937 mRNA 0.46 9 21634760 21640993
XM_034313703.1 False 774 mRNA 0.52 10 21625860 21640993

Neighbor

gene id symbol gene type direction distance location
LOC117599724 NA coding downstream 47591 21574583 ~ 21578269 (-)
LOC117599736 NA coding downstream 51308 21572325 ~ 21574552 (-)
LOC113524833 ddhd1,LOC108412684 coding downstream 258315 21353629 ~ 21367545 (-)
LOC113524818 LOC108257685 coding downstream 273588 21343168 ~ 21352272 (-)
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding downstream 288921 21333265 ~ 21336939 (-)
LOC113525508 NA coding upstream 44101 21685094 ~ 21689308 (-)
LOC113525042 NA coding upstream 82742 21723735 ~ 21728414 (-)
trnav-uac_10 NA coding upstream 91196 21732189 ~ 21732261 (-)
nt5c1bb LOC108257680,LOC102795473,LOC100693789,LOC102194616,LOC101069542,LOC101468566 coding upstream 103943 21744936 ~ 21750986 (-)
kcnk5b LOC108257676 coding upstream 121573 21762566 ~ 21772675 (-)
LOC117599742 NA non-coding downstream 1561 21623236 ~ 21624299 (-)
LOC117599744 NA non-coding downstream 27806 21596982 ~ 21598054 (-)
G299317 NA non-coding downstream 33413 21572310 ~ 21592447 (-)
LOC117599743 NA non-coding downstream 124148 21500657 ~ 21501712 (-)
G299070 NA non-coding downstream 346069 21259456 ~ 21279791 (-)
G299353 LOC108265589 non-coding upstream 51480 21692473 ~ 21695643 (-)
G299359 NA non-coding upstream 73910 21714903 ~ 21716462 (-)
G299366 NA non-coding upstream 102186 21743179 ~ 21744770 (-)
G299375 NA non-coding upstream 167407 21808400 ~ 21817234 (-)
G299420 NA non-coding upstream 249822 21890815 ~ 21891501 (-)
LOC117599725 NA other downstream 28892 21592274 ~ 21596968 (-)
G299022 NA other downstream 552184 21072926 ~ 21073676 (-)
G298875 NA other downstream 961320 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 1183568 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 1246955 20378834 ~ 20378905 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 331088 21972081 ~ 22067610 (-)
G299449 NA other upstream 355121 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 383623 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 428935 22069928 ~ 22082320 (-)

Expression


Co-expression Network