LOC117599758 (LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449)


Basic Information

Item Value
gene id LOC117599758
gene name LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 832360 ~ 832825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313776.1
ATTCATTCTCTCGCAGTCTACaggagaagcagcagcagcaacatgcCCGACCCAGCTAAGGCCGCTCCCAAGAAGGGATCCAAGAAAGCCGTGACCAAGACGGCCGGCAAAGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCTATCTACGTGTACAAAGTCCTGAAGCAGGTGCACCCCGACACCGGCATCTCTTCTAAGGCGATGGGTATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGTGAGTCCTCTCGTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGTTGCTTCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCTTCATCAACCCAACGGCTCTTTTAAGAGCCAC

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313776.1 True 466 mRNA 0.58 1 832360 832825

Neighbor

gene id symbol gene type direction distance location
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 514 831420 ~ 831846 (+)
LOC117599755 h2afx,LOC107386469,LOC106516344,LOC100693699,LOC101160258,LOC107677420 coding upstream 6197 824677 ~ 826163 (+)
LOC117599760 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 12937 818996 ~ 819423 (+)
LOC117599756 h2afx,LOC107386469,LOC106516344,LOC107677420,LOC100693699,LOC108260105,LOC106527800 coding upstream 19558 812260 ~ 812802 (+)
LOC117599762 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 25630 806321 ~ 806730 (+)
LOC113525267 NA coding downstream 26842 859667 ~ 861490 (+)
LOC117599763 NA coding downstream 64175 897000 ~ 897286 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding downstream 182059 1014884 ~ 1036096 (+)
LOC117599792 NA coding downstream 370688 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 460957 1293782 ~ 1332827 (+)
G287627 NA non-coding upstream 29836 762431 ~ 802524 (+)
LOC113525268 NA non-coding upstream 363956 454598 ~ 468404 (+)
LOC117599767 NA non-coding upstream 441158 388695 ~ 391202 (+)
LOC117599768 NA non-coding upstream 676765 155007 ~ 155595 (+)
LOC117599770 NA non-coding upstream 677797 154129 ~ 154563 (+)
LOC117599769 NA non-coding downstream 93408 926233 ~ 926639 (+)
G287814 NA non-coding downstream 157385 990210 ~ 990435 (+)
G287817 NA non-coding downstream 172842 1005667 ~ 1007006 (+)
G287872 NA non-coding downstream 351258 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 409036 1241861 ~ 1242067 (+)
G287892 NA other downstream 410232 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 426351 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 525361 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 1163295 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1300333 2133158 ~ 2142181 (+)

Expression


Co-expression Network