LOC117599763


Basic Information

Item Value
gene id LOC117599763
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 897000 ~ 897286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313780.1
CTGCGTGGCGAGTTTTATTGAGCAGCTTGACTTCGAGAGAGCAGTATCATGTCTGGCAGAGGCAAGGGCGAAAAGGGGCTCGGCAAAGGAGGCGCCAAGCGTCACCGTAAAGCTATTCGCCATCTGCCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTAGTCACCGCCATGGATGTGGTGTATGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTTGGTGGTTAAACGCTCCAACACCGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313780.1 True 287 mRNA 0.56 1 897000 897286

Neighbor

gene id symbol gene type direction distance location
LOC113525267 NA coding upstream 35510 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 64175 832360 ~ 832825 (+)
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 65154 831420 ~ 831846 (+)
LOC117599755 h2afx,LOC107386469,LOC106516344,LOC100693699,LOC101160258,LOC107677420 coding upstream 70837 824677 ~ 826163 (+)
LOC117599760 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 77577 818996 ~ 819423 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding downstream 117598 1014884 ~ 1036096 (+)
LOC117599792 NA coding downstream 306227 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 396496 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 443222 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 466798 1364084 ~ 1379201 (+)
G287630 NA non-coding upstream 3496 801623 ~ 893504 (+)
G287627 NA non-coding upstream 94476 762431 ~ 802524 (+)
LOC113525268 NA non-coding upstream 428596 454598 ~ 468404 (+)
LOC117599767 NA non-coding upstream 505798 388695 ~ 391202 (+)
LOC117599768 NA non-coding upstream 741405 155007 ~ 155595 (+)
LOC117599769 NA non-coding downstream 28947 926233 ~ 926639 (+)
G287814 NA non-coding downstream 92924 990210 ~ 990435 (+)
G287817 NA non-coding downstream 108381 1005667 ~ 1007006 (+)
G287872 NA non-coding downstream 286797 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 344575 1241861 ~ 1242067 (+)
G287628 h3f3b,LOC105888650,LOC101068541,LOC105896821,LOC105893409 other upstream 4992 812277 ~ 892008 (+)
G287892 NA other downstream 345771 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 361890 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 460900 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 1098834 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1235872 2133158 ~ 2142181 (+)

Expression


Co-expression Network