esco2 (esco2)


Basic Information

Item Value
gene id esco2
gene name esco2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14697281 ~ 14707028 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313826.1
TCCCCAAGCAAACCGGAAGTCGTATCACGCGCTCGCGCAGAAGCTGAGTTTGGCGCGCGGTTCAAAAGCCAGAATTGTCAGCGCGCGCGCGAGTGAGAGAAGAGCGACACTGACAGACAGGagtcttttttctgtttaagaGTAAAACAGAACCGAGTTTAATCCGCGAATCATctcaGCGACATGAAAATGTCAACCAGCACAtcaaagaagagaaaacagtGCTCTCTGAACACTGAAAGTAATCCAGCGAAGAAGAAATCCTTGAGACAGGAGAGTTACGCAAAGAGAACGTCCGCTCGGCTGAAGGAGAACTGCCCGTCTCTGCTGAATTCCCCTGAAAGGATGCGTTCCCCATCGCGCTCTCCCAGTACACCCAGAAAGATGCCGCGCACCTCCACGTTGGAGTCTCCTCCTAAAAGAGCGTCTCCTTTCAAAGCCACACTCAGAGCAGGGTCGTTTTACAGCAAGCAGAAACCCCTTTACCTCACCCCGCTCGAAAGGAAGGTGCTCAAGGAAACCAAGTCGCCTCCCTCAAACCAAGATCAGCCGAGCGCTCCTGTGTCATCAGGAGGGAACATCAAAACCAAAAAGCctaaaaagaaggagaaagtgaGAGCACAGAAATCCAACCTAAAGGGCTACTTCGCACCTAAACCCACCTGGAGCACGAAAGCAGATTCATCCACAAACACCTTGGAGGTGAAGAAGCAGACCTCTATTACGTTCGGTAGTTTGAAATCCAAAAACAAACCCAGGATCGTCATCGGCGCTGCTTTCTTCGGCACTGGGAAAAAGCCAGCGTCCATGTACAAGCCTCACGCTCCGAAACCGAAGCCCAAACAAGCCACCTCTCAAAAACCTGCAGTGGAGAAGAGTGTGGCTCCAGCGCAGAGAGATCAATCTCCAGTGCGCCAGgctgtttttattcacaaaCCTAAACCGAATCCTCAGCTGCTGTCTAAACCCGGAGACTGTGGTGCTTCTGAGGGCGCAGAACAGACATCACATCCTCAGCCCTTGAGCTCTCACAGTCTCTCACAGTCCGCTGAGGTTAACAAGGCAGTAACTAGGAAACCTCATTCACCAATCAAATCCTTAATCTCAGATCACCAGgACACACCTGCCACTCCTGGCTCAGACACGGTGCTGGACGCCAGTGAAatcagtaactcaaataacagcAGCTGTTCAGATAACGAAACTTCAGCCGTGTACCCCATCTTCGGCTCCAGAAgGTCTCAGAAGAAGTGTGGTCTGTCCTCCCCTCTGAACTGCAGCACTCCGTCTGCTGGCACGCCGTCTCTCTTGGTTAAAGAAAGGAGCTCCAGGAGGAAGAAGGACCTGAAGAAGCAGAATGATGATGATCAGCTCATCATTGATGCTGGCCAGAAGCAGTTTGGTGCTACTACCTGTAATTCATGTGGCATGCTGTACAGTGCAGACAGTCCAGAGGACAACTTCCAGCACACGCAGTTCCACCAGCGCTTCCTCGACACCATCAAGTTTGTGGGCTGGAAGAAGGAGAGGGTTGTGGCAGAATTCTGGGATGGAAAAATCATCCTTGTTCTTCCTGAAGACCCAAAGTATGCAACTAAAaagGCAGAGGACGTGAGACGTATTGCAGATAGTGAGCTCGGATTTCAGCAAGTCAACCTCAGCAGCCCCAGTGCTGCCAAAACCTACCTGTTCATCAACAGTGACAAGATGGTGGTGGGCTGCCTGGTGGCAGAGCCCATAagacagGCGTTCAGAGTGCTGGCGCAGCCGGAGAAGCCCAAAGACATGACCAAGGAGGACTTCATGGACCACCACAGAGCCTGGTGCTGCTCCAGCGTCCCGGAGAAGGCCATTTGTGGAGTGAGTCGAATCTGGGTGTTCAGCCTGATGAGGAGAAAGAGCATCGCCACACGTCTGCTAGACACCGTCAGGGGATCGTTCATGTATGGAAGCCCACTGACCAAAGAAGAAATCGCCTTCTCTGACCCCACTCCTGATGGCAAGCTCTTTGCTACGAAGTACTGTGGAACTCCCGCGTTCCTGGTCTATAACTTCATTggctaattttttaaaactggttTAATGTTTGCTCACTGTTTTATACTCTGTAGACTGATAAATAACTTGCTGCTCTTctgttttataatgtttttaacagaTTAATTCAGTGCTAATGGATGTTTTTTCCAACACGCATTTAATGGAACAGTTGGTCAAAAAAGACAAATTGATACACGTGCCTTGAAAGATTTTTGGCTCAGTAATCCAATCTGTACAGTTTcataaatctatatatataaaaaatatatatacaaataaaatcaggtgcacatgcagttatttaaacatgcacacacttttcaGTGCCAAACAAAGGAGCAAAATTCAGACAGTGAAACATGACTTAGCTCAGTGCTTACATTAAGGATAAGTGGGAAATAGTGTACACTTCATATTTTTTGCTTAATCCATGAAGTTCAATCTGTGTGGAAAACTTTCCAAGTTAGTTTTTAGATGTGAATTTTTCACTTCAAGTTTGTTACTCAGGCAAGTTGGCAAGTTCATGTTTTATctcctgtttttaaaatgaatgaattgggAGTTGATGACCCGTCATGTTCTGAGAACAGTCTGCTAGTATAAATGATTTATGTGCagtctttatttgtaaatattttaaataaatgttgctGCTAag

Function

symbol description
esco2 Predicted to enable acetyltransferase activity. Acts upstream of or within several processes, including bone regeneration; fin regeneration; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be located in chromatin. Is expressed in digestive system; heart; nervous system; otic vesicle; and pectoral fin. Used to study Roberts syndrome. Human ortholog(s) of this gene implicated in Roberts syndrome. Orthologous to human ESCO2 (establishment of sister chromatid cohesion N-acetyltransferase 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0007507 heart development biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000785 chromatin cellular_component

KEGG:

id description
K11268 ESCO, ECO1; N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313826.1 True 2698 mRNA 0.47 11 14697281 14707028

Neighbor

gene id symbol gene type direction distance location
scara3 scara3 coding upstream 37335 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 76383 14597191 ~ 14620898 (+)
papola papola coding upstream 274109 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 316707 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 318422 14378778 ~ 14378859 (+)
hddc2 hddc2 coding downstream 130916 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 608025 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 629156 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 778063 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 799831 15506859 ~ 15557349 (+)
G295822 NA non-coding upstream 31514 14665532 ~ 14665767 (+)
G295818 NA non-coding upstream 32900 14664093 ~ 14664381 (+)
G295787 NA non-coding upstream 66121 14627102 ~ 14631160 (+)
G295766 NA non-coding upstream 122486 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 295806 14401394 ~ 14401475 (+)
G295852 NA non-coding downstream 11257 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 68695 14775723 ~ 14775932 (+)
G295917 NA non-coding downstream 136022 14843050 ~ 14870272 (+)
G296181 NA non-coding downstream 598533 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 616821 15323849 ~ 15324587 (+)
trnas-gcu_16 NA other upstream 309724 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 311776 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 312894 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 314529 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 392590 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 416739 15123767 ~ 15189612 (+)
G296138 NA other downstream 516618 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1459370 16166398 ~ 16180232 (+)
G296562 NA other downstream 1607235 16314263 ~ 16315126 (+)
G296825 NA other downstream 1890122 16597150 ~ 16597787 (+)

Expression


Co-expression Network