ccr6a (ccr6)


Basic Information

Item Value
gene id ccr6a
gene name ccr6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11138827 ~ 11142314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313834.1
CTAACAGCCAAAACATCAAGCAGCGTATTCAAAAGACTTTCAGATTGTATCAAAGACTCCACCTCATTCAAGTACATACATGCACACGGTGCCGATCGTGCAGTTACGCAGGACACGACAGCTGTGAAGCAGACTTGCGGCAAGGCTGTGTCAAAGATGAATATGACTGGGGAATATGACAGCTATGACAGTATGGAAAGTCCATGTGAGATGAATAGTAATTCAGTAAACCTTCACGTTAAGTACTATCTCCAGGTCTACGTGCACTCCCTTATCTGCATTGTAGGTTTCATTGGCAATGTCCTGGTGATCCTTACATATGCTTTCTATAAGCGCACCAAGTCCATGACAGATGTTTACCTACTTAACGTGGCCATAGCAGATGTCCTGTTTGTAGTGGCCCTGCCTCTGATCATCTTTAGTGAGCAGAGTGGCTGGGCATTGGGTGATTGGTCCTGCAAGCTGTTGCGTGGAGTCTACAGCATCAACCTGTACAGCGGCACCCTACTGCTGGCTTGCATCAGTTTAGACCGCTATTTGGCTATTGTACAAGCTCGCCGCTCTTTCAGATTCCGCTCAAGCATGATGGTCTACAGTTACGTGATCTGTTCAGTAGTCTGGCTTTTAGCCTTGCTCCTGACTTTGCCCACTTTCATCTACTATGAACGCTACAAACTCAGTGAAACATTCAATACAACATTTCTAGAATATACAGAGATTTCTGATGGTACATACTTGACTGAGGAGCCTTGGACTTCAACTCCTTCACTTCCACTCAACTTGCAAGAGGAGAAACACGTTTGCTTCTTCCGCTTCAAGGACAACAACACTGCAAAGCAGGTCAAGGTACTAGCGCCAAGTGCCCAGGTGGCTATAGGGTTTTGCTTACCATTGCTGATCATGGGCTTCTGCTACTCCAGTGTGGTGTTCACACTCCTGCGTGCCAAGAACTTCCAAAGACACAAGGCTGTGCGTGTGGTCCTGACTGTGGTGCTGGTCTTTGTCATCTGTCATCTGCCTTACAATGCAGCACTGCTCTACGACATCATTTACATGTTCTCCAGTACAGAATGCAGCGATTATaacaacacacacctgctgctgACCCTCACAGAAAGCCTGGCCTACCTGCACTGCTGCCTTAACCCACTGCTCTATGCCTTCATTGGTGTCAAATTCAGGAACCACTTCCGCAAGGTTGTGGAGGACCTCTGGTGCCTTGGGAAGAGCTACATCGGGGCACGGCGCACCTCACGAATCACCTCTGAGGCATACTTATCTTCCCGAAGGTCTGTAGACAGCTCAGGGAACGAAAACGGCACCTCCTTCACCATGTAAAAAAATTGGGTATCCCTGGTTAACAATTATAGCTGAGGTGTATTAAGACTATCAGGTTTGTGGTTCTTTGCTGCACATAAAAACAATGCAAGCTCCATGCTacagttaaatgtttttttgttttgttttgttttgttttttaaataaatgtttagtcATTGCAGCAAGAAGATTTTATGTAACTCCTATTCATGTTTAGTAATCCctttttgtatttgtacataaagtgttttattatatcTTGTTGTCTTCTGTAACTTTATTTCGTAAATGATATGAGCttcaaatgtataaaataaattttttagtttttgcacTGAAGTGTTCCTGTACCAGTGTGGTGCGCTTTG

Function

symbol description
ccr6 Enables C-C chemokine binding activity and C-C chemokine receptor activity. Involved in calcium-mediated signaling; cell chemotaxis; and positive regulation of flagellated sperm motility involved in capacitation. Located in cell surface; sperm flagellum; and sperm plasma membrane. Biomarker of several diseases, including IgA glomerulonephritis; cutaneous T cell lymphoma; exanthem; psoriasis; and systemic scleroderma.

NR:

description
PREDICTED: C-C chemokine receptor type 6-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313834.1 True 1688 mRNA 0.44 2 11138827 11142314

Neighbor

gene id symbol gene type direction distance location
cep43 fgfr1op coding upstream 156 11120166 ~ 11138671 (+)
myt1la LOC108257609,LOC108411077 coding upstream 22147 11067464 ~ 11116680 (+)
rnaseh1 rnaseh1,LOC107693208 coding upstream 103940 11028563 ~ 11034887 (+)
kidins220b LOC108258057,LOC108410983,LOC103040274 coding upstream 396496 10722394 ~ 10742331 (+)
mboat2b mboat2b,LOC108257786,LOC108410960,LOC103039741,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding upstream 420303 10683032 ~ 10718524 (+)
trnai-aau_1 NA coding downstream 1573 11143887 ~ 11143960 (+)
trnai-aau_2 NA coding downstream 2625 11144939 ~ 11145012 (+)
trnai-aau_3 NA coding downstream 3677 11145991 ~ 11146064 (+)
trnai-aau_4 NA coding downstream 4720 11147034 ~ 11147107 (+)
trnai-aau_5 NA coding downstream 5787 11148101 ~ 11148175 (+)
G293546 NA non-coding upstream 1824 11062896 ~ 11137003 (+)
G293445 LOC108257787,LOC108410973 non-coding upstream 461692 10675680 ~ 10677135 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding upstream 494675 10643500 ~ 10644152 (+)
G293411 NA non-coding upstream 528981 10609626 ~ 10609846 (+)
G293380 NA non-coding upstream 577811 10560797 ~ 10561016 (+)
G293758 NA non-coding downstream 232490 11374804 ~ 11375264 (+)
G293817 NA non-coding downstream 341068 11483382 ~ 11483590 (+)
G293820 NA non-coding downstream 397212 11539526 ~ 11539953 (+)
G293864 LOC108257814 non-coding downstream 530169 11672483 ~ 11675661 (+)
G293873 NA non-coding downstream 548338 11690652 ~ 11692331 (+)
G293528 NA other upstream 113854 11018406 ~ 11024973 (+)
LOC117599733 NA other upstream 456163 10681310 ~ 10682664 (+)
LOC117599798 NA other upstream 968088 10158955 ~ 10170739 (+)
G293016 ileu other upstream 1188096 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1959654 9074028 ~ 9179173 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 419108 11561422 ~ 11579249 (+)
rps29 NA other downstream 581667 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2129768 13272082 ~ 13274243 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other downstream 2326413 13468727 ~ 13551228 (+)
trnaf-gaa_29 NA other downstream 2412561 13554875 ~ 13554947 (+)

Expression


Co-expression Network