LOC117599786 (LOC107725728)


Basic Information

Item Value
gene id LOC117599786
gene name LOC107725728
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 85203 ~ 101979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313880.1
ATTTAACAATGATATTGCTCTTCAGTTTTCAATTAAAAGTGGATCTTTATCTGATTTGGGGATCAAAGAAATTAGTCCCTGCTTCATTGTGGGTGTCATCTCTCCTTTGTGAATACATTCTTTAAACAAACAATATAAAGGCTGCTTTAAGAGATcccaaaaatgtaaatcaaattCAACAAACAGGCCATCAGTACCTGGAGATTTTCCCCTTTTCATAGATTTCAGTGCCACTTCCATTTCAGTAATAGAAAGGTCAGAGTCACATAGTAATTTATTAACACCTCATTAACACCTGAAACTttatcacagacacacaaaagaaaagaatcacatttttcttGAGAAAACGGAGAAGTATACAGTTCTTTGTAAAAATTGTATACAAAAGTTGAGATCATTCCTGGATCTGTACATAAATCACCATTAATCTTTAGAGCagagagagatgttttttttacgATTTCTTTTCTCTAGAGCAAAAAAGGAATTAGTGTTTCTTTCACCCTTCTCGATCCATTTTGCTCTAGAACGTATGAAAGCCCCTTTAGCAATCTCTGTGTacatattttcaattttcatttGACAGACACTATATTCTACCTCATCCTCTTTACTGGGATAATGTTCGAGATGCTTCGGCACTTCGCGTCTCAGCGTATGACATCAAACTACCGCGAGATGCAGCCCTGCCTCGATCTGCTTGCAGGATGGATCCCGCGAGATTTCATTCAGCAATTCCCCTCCCCCACGCGGCACACCCTGGATCGCGCCGGCGCCGTTACTCACTCACCGCTTTGCTGTCACTTTCGGGAGGAGGCGTTTGCCGTCAGTGTATCCAAGGCACTTCACTTTCAGCCTGAGACCTTCAGTATCAGAAAGGGAAGCCATATTTCAGAACAGAGACTACAACCAGCTTCATCAGAAACATGCCTCACTCGGAGACCATTGACCTGGCTTGTCTTGGCCGACCGTTTCAGCTGGGAATGCTGTATGATTGCAGAAAGGATTCTCTCATTCCAGGAATAACTCTCTGGGACTCTGATATGCTACAGAAGAATATTAATGTACATACACAGCCAAACACTGACTTCAAAATCATTGCTTCAGATTCAAGTGAAGACAAAGCAGAAGCTTTGAATGTCTCTGCATCTCTTGAAGCCAGCTTTCTATGTGGATTAGTCAGTGTGAAAGGCTCAGCTGACTATTTACATGACAAGAAGAAGTCCAAAAATCAGTCTCGAGTCACTTTACAGTATCGGACAACCACGCGTTTTGAGCAGTTAACTATGGAGCATCTTGGAGTAGGGAACGTAAAGCACAGCCATGTATTTAAAGAGGGTTCGGCCACACATGTTGTTACGGCTCTACTGTATGGAGCTCAGGCATTCTTTATCTTTGATCGTGAGGTTTCATCCAGTGAAAGCCATCAAGACATACATGGCGACCTCCACGCAACAATCAAAAAGATTCCTACAATATCAATTGAGGGCCAGGCATCTTTGACCATGAAAGAACTGGACAAAGACAAAATAGACAAGTTCAGCTGCACTTTCCATGGAGATTTTGCTCTGGAAAATAATCCAGTTACTTACGTAGACGCCATCAAGGTGTACTCAGAGCTGCCGAAACTGTTGGGGGGAAAAGGAGAGAATGCTGTGCCCATGACCGTGTGGCTTTATCCTCTGAAAAAACTTGATTCAGCAGCTGCTCAGTTGGTCAGGGAGATCAGCGTTAGCCTGGTACGACGAGCACAACGGATCATGGATGGACTGGATGATTGTGACATTCGGTGTCAAGATCTGATGAGGGACAATGTCGCCATCCAGTTCCCTGAAATCAAAGCCAAGCTCAAAAACTTTAAGGACCTCTGCTCAGAGTACAAAGTCATTTTTCAGAAATATCTCTGCAGGCTTCTTCCATCTATAAGGGGTGGAGGAAAAGAAGAACAGGAGCTTTCAGATTTTctgaacagaaaagaaatgtcCCCATTTCAGGGTGTTCTGATAAATAAGTACCTAAATGAGCGAGAGCGGGAGATCACTGTGGTTGGATCTTACCTCGACATCATGAAAGACATCCCTGTTCTTTCAACCAGCAATGACCTGGACAAGATTGTCTTGAAAGCATCCAATGACTATGTGGTAGCCTTTGCACTCTCCTCCTTAAATGAAAAGGAACTCTACCTTTCAGACTTAAAGAATTACCTTAAACAACAAACAAGTGACAAAGGGGAACAGCCAAGCTATGACCAAAGCTCTACAGAAAGGGCAAAAGAATGGTTTTCTTTGGAAGATGTAACTGCACAGAACAGGGAAAACATACAGGCCTTCGTAGATTTCAAAGAAGCcaataaaggaagaaagaacaTTGAATTCTGCATTGTATCGATCCCAGATGAACTCAGCACTGCCTCTTCAATTCGTGTTTATGAACGAGCAAAACTCATCAGCTCAGAGGACGAGCTTCCCTCAAAACCCCCAATGCCCAATTTCTTGTGCGCCGCGCATGACTGCATACATCTGCAGATCACGCCTCCTGACCACGGCGTTAGTTGTGTGACCTCGTACTGTATTTCATACAAGTCTGCAGAGAGCTCTGAATGGACAGAGGTGTATACTGACGGAATTTCTGATCAGGTCACTGTCAAGCAGCTACAGCCGCATAAAGAATACTGTTTTACCTGTAAGGCAGTGTGTCGTCCAGGTGTGAGTCTGGCAAGTGACAAAACTCAGTTCTTCAAGACCCTTCCATGTGCTCCTCCAGGAGCACCCACAGTCAAAAGAGTAGAATCTGAGTCTGCAACATTAACTTGGGATGTCCCTAAATCTGTGGGTGAAGATATTATGGTCACTGGATACGTGTTGGAATTCAGAGAACGACCAAAGGATCAGGAAACCGAAAAGCCATGGACATCTGTGAAATCTGCAAGCAGGGATTACACTTTTCAGGGACTGAAAGCAAACACAGTCTACACAGCCAGAATTTTTGCAAACTGTGGAAGTGATGGAGTGAGTCTCCCCAGCCCTGAAACTGTGTTTTCTGCATGTTCAAAGAGCAAATCCTCAGACGAGGCTGGAAGTGGATTGTTCCTGGTTCAATCTTCACGCATACAGAAGGGGAATCCTTCAATTTATAAACTGACACTAcgcaaaaaaatgaaagagaatgtAGAGTTTGATCAGTATGTCTTTGGAAAACAGGTGGAggatgtgaaaaacaaagtcATTCTTCTTGTAGGAGCGACAGGTGCAGGAAAAACCATGCTCATCAATGTGATGGCCAACTACATACTGGGCGTAAAGTGGGAGGAAGCGTATCGCTTCAAACTAATCCACGAAGAGACTCATCGCACACAGGCCGAGAGTCAGACATCTATCGTCTCATCTTATGAGCTGTACAGTCAGCCTGGCTTTAAAATTCCCTACCCGCTCACAATCATAGATACACCCGGCTTTGGTGATACAAGAGGAATCGAATATGATAAACTGATTACAAAGCAGCTGAAAAGCTTTCTTTGTAGCCCTTTGGGAATCGATCACATTGATGCCGTCTGCTTCGTCGTTCAGGCCTCTCTGGCTCGCCTGAGTGCCAATCAGAGGTACATCTTTGACTCAATTCTGTCCATTTTTGGCAAAGACATCGGAGAGAACATCATGATTATGGTGACATTTGCAGACAGTGAACAAATCCCAGTCCTGGAAGCCATCAAAGCAGCAGATCTGCCCTGTCAGAAAAATACAAAGGGAGAGCCCATGCATTTCAAGTTCAACAACACAGCTGTGTATGCAGACAAGACCATAAAAGAGCCTACAACCTCTGACAGTGATTCAGATGAAGATGGTGAAGCCAATGGTAATAAACTGTACAACATTGTCTGGACATCGACTTTCAAACAGATGAAGGCCTTTTTCAAGGCACTGGgcaaatctgaaaataaagatcTGACACTAACCAAAAAAGTCCTGGAAGAACGAGAGCGCCTCGAAAAAGCCATGGCAGATCTGACCCCTCAAATCACTGCTGGCCTCACTAAACTGAGAGAAATTAACACAATTAAGGAACGTttgaaaaatgagagaaatagCATAAAACAAAGTGAGGATTTTGAGCAAGAAGTTGAGGTGATAATACCAAGAAGACACCCCATAGATAGTTTTGCCCTGAATTGCAACTTATGCTTATTCACATGCCACTCCACCTGCTTCCTCCCTGCAGAAGATTCTGTGAAGACTTGCGCTGTGATGGATGAATCTGGATGCTGTGTTGTCTGCCCTAACTCCTGCTCTCACACTTTTCATTTAAAGGAAAAGGCAAAGTGGacatatgaaaagaaaatagagaaaaaaaccaTTAACGAGCTGAAAGAAAACTTCATGAAGGCACACGGAAGAATTTTGCAAACACAGGATTTGATTGATGTCCTTGAAAAGGACTTAACTTCAATTCAGGCCAAACTGAGGAAGCTAATCAAAATGTCCTCTGATTGCTTGAATCAACTGAATAAAATTGCACTGAAGGCCAGCTCTCTCTCCACTGCAGAATACCTTGAAATCTTGATCAAAACGCAGAAGGCGGAGAAACGTCCTGGATTTGAAGAACGCATTGTTGAACTCGAgaggattaaaaatgaaattcttcttcagaaaaaaatcacagaaggAGATGATCTGCTCACAGAGGAAGAGCCACCGCCAATGAAATCTGGAGACTGTGGAAATTTGGAGTTCTTAACTTCAGTTTTTAATCATGACAGAGATGAAAATGAAGACTGATGAGTTGTAAAATCACCAGtaagattttaatttttcttcttttttttgcttatataATCACATACAGGTCTGTGTCTGGACTCAGTCAAGAGGCTGACCTTACTATATTCAGCTTTTTAAAACTGGCAAATGGGATTGTGggaatgttattttattttcagatctGGTGCATGTCATACTGCTGTTTAATTGTGAAACATTCCATAATTGAAAAGTGTCAAAATATTGTGGAAAAGTCTGTGAAAATCAACATCAAGCAAGAAAACGAACAAAGTTGTAGATTGATGATGTCTATATTCGTATATTGGTTTATCTATATGTGGTACTATAGTTAAAGGGGTAATATGTGGTTAACAATGAGTTAAATGATTGTGTGATAACtaatcaaaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313880.1 True 5169 mRNA 0.42 4 85203 101979

Neighbor

gene id symbol gene type direction distance location
LOC113523954 LOC107573535,LOC107574960,LOC107710299,LOC107571679 coding downstream 18197 120176 ~ 134264 (+)
LOC117599788 LOC107739129,LOC107589765 coding downstream 101041 203020 ~ 210184 (+)
LOC117599754 NA coding downstream 303173 405152 ~ 405946 (+)
LOC117599791 LOC108280478,LOC108412378 coding downstream 409077 511056 ~ 517444 (+)
LOC117599762 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding downstream 704342 806321 ~ 806730 (+)
LOC117599771 NA non-coding upstream 13302 69710 ~ 71901 (+)
LOC117599770 NA non-coding downstream 52150 154129 ~ 154563 (+)
LOC117599768 NA non-coding downstream 53028 155007 ~ 155595 (+)
LOC117599767 NA non-coding downstream 286716 388695 ~ 391202 (+)
LOC113525268 NA non-coding downstream 352619 454598 ~ 468404 (+)
G287627 NA non-coding downstream 660452 762431 ~ 802524 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other downstream 704327 806306 ~ 897362 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other downstream 705214 807193 ~ 898410 (+)
G287628 h3f3b,LOC105888650,LOC101068541,LOC105896821,LOC105893409 other downstream 710298 812277 ~ 892008 (+)
G287892 NA other downstream 1141078 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 1157197 1259176 ~ 1264632 (+)

Expression


Co-expression Network