oma1 (oma1)


Basic Information

Item Value
gene id oma1
gene name oma1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5079221 ~ 5097477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313881.1
TATGCGCTGTTGAAGAGTGGACTGTTTTTGATGTAACACTCGACCTCGACCGCAGCGGACAAATGGAATAGCGCTGTAGTGAAACTGAACTCaagagaaattaaatgttttgtagGTAACACACTGATAAACTTGAGGTGACCAGGATTTTGTCCAGTTAATGATTTTTACCCAGTGTCCTCCATTCTTTAGCTAAGCGTGTCcgactacaacaacaacaacaacaacaacaaaacccacCGCCTTTAACGTCCTGTGTAGTTTCAGCATCATTTTAGGGAACTTATGAAACTAAAAACTTGCGAAGCTACATTGCACCTAACCTCTAACTTTCGCTAGCAGGTTTTCAGTTCGGTGCGGATTGATGTACTGTTGTGTGCATGTATGGAGCTTTGCGATTAATTCATGAGTTCTCGCACAACTTTTGACAGCTAGCTATACTCCAGGTAGGCAGCAGTCTGTTCAGAGCTTTCCAGCAGAAATGCTTTTGACTTGCATTCGTTTTTGTCAAAAGGCACCATCTTTACTGACACTCAGCCGACTGCGGACAGTCCACCTGTGTCAGAAACAAACTCCTAATGGCTGGAGCTCGAGAAGTCCAGGCTTCTACTCGTCTGATTTACGATCAGCTGCAGTGTTTTGTTCAAGCCCTTCTCCATCCATCCGTCtcctgtaccgcttatcctacacaaggtCTCGGGGGAACCTGGAGCCAATCCCTGGGagctcggggcacaaggcgggggacatcctggatggggtgccaacccatcgcaggacgcaatcacacacacactcacgcacaacggacaatttggaaatgccaatcagcctacaacgcatgtctttggactgtgggaggaaaccggagtacccggaggaaacccccaaagcacggggaggacatgtaaactccacacacagagGGCAGAGGCAGGGTTCGAACcctcaaccctggaggtgtgagacaactactaagccaccgtgccccccgAGCCATTCTTCTATTTGTCACAAAACTATTTTGCCAAGACACCTTTCCTCTGCTCCAGTCTGTATCCAGCAGCTTCCTGTCCGCTTCCCAGCCGTCAGTGGTCCTGTGAAGGAGTTTCACACTTCAGCTGGACTCCGTGCGCCGCctgctgtgctgctctggctgCTGGTCAAACCTCTGCACAAGGTCACAGCCATCATCCTGGGAAGAAGTATCAGGAAATGGTGGAAGGCTTTGCCATCCAATAAGAGGCAGCTCTTCCGTGAGTGGGCGTGGCAGCGGCGATGGCGTCTGATGGGTGTTGGCACAGGACTGCTGCTCTTCATCTCGCTCTTCTTCCTCACCTACATGGAAGAGACTCCTGTGACTGGCAGAAGCCGGTTACTGGTTTTCAGCAGGGAGAACTTTATTAAACTAACTGATCATGCTTCAGAAATGTACTTAGAGGAATATGGGAATTCGTTCATCCCCGATTTTGACCCCAGGCATCAGGTTGTTAAGCGAGTGGTCCAACACTTGGCTGATAGAAACCGGGATATTGAAGGGATGAATTCTGTACCCTGGACTGTTCATGTGATAGAGAAGCCCATTGTCAACGCTTTCGCCATGCCTAATGGGATGATATTTGTCTTTACAGGAATGCTGGAGGCTGTTGGAGACGTCCATCAGCTGGCTTTTGTCCTGGGGCATGAGATGGCCCATGCTCTGATCGGTCATGCCgcagaGCAGGCTAGTTTGGCTCATGTGCTGGATCTGTTATCTATGATCCTGTTGACAATGATTTGGGCAATCTGTCCTCGAGACAGTCTCGCTTTGTTGGGGCAGTGGATACAAGGCAGACTAGTTGAGATCTTGTTTGACAGGCCTTATAGTCGGAAACTGGAAGCTGAGGCTGATCAGGTTGGACTGCAGCTGGCGGCTAAGGCATGTGTGGATGTGAGAGCCgggcctgtgttttggcagcagATGGAGTTATTTGATCAAATAAAAGAAGAGCCCACTATGCCCGAGTGGATTTCCACGCACCCCTCCCACCACAGTCGCATCACACACCTTGACCATCTCGTCCCAGAGGCTATAGAGCTCCGTGCGAGATGCGGCTGCCCTGCCCTTCCTGACCCTGATCCCCGGGCTGTCTTTTCCAAGATTGCACAAAAGTTGCTTGAGGAcgcagagaaaggaaaaaacaaagcaaaaagagaagagaaggagagagaacgAGCGGCAGGCACACAGCAGAGAGTCCAGCCTCAGTTAGGGGCAGCGTTGGTGATATCAGCCCAACAGCAGACTCTGCTCAGTAAAGAAGACTTAACAGAAATCAGACTTCTGCGTAAAGAGGTTGAACCAAAAACGAATGGAAGCTAGAAGGGTCATTTTATATGATGCGCCATACTTGATTTATCAGTAGCTTCTGTTCCCAAGCAAATAACAGCTGTTATTGCTCTGTATGGTCAATAACTTTATTATAAACCCTGTTCTTCAGGTTACCCAGGTTTAGCAATCTGGCAATAATACGAATTAACATTAAGTGACTGCAGATGTTGGCCTTGTAGCCAGCTGTGACAGGTCCGTTTTACCTGACTGCCACACAAACTTTTGCTATAGCTAAAGCTATTTagctgtgaaaaatgtgaagGCTGTGCAATAACGAATAATATGTGAGCTATTACTTTCCATATAAATGTGAACATCATACGAACAAGGCAATGATTGTAAGCATGGGTTTGATTAGCTTTAATGTTAGGATTAGCATAATAGCCCCATGCAGATGAAGCTACGTATAattgacttttatttaatttattcacaaAAGGCCAGAATCAGACTTTATTATCATGTTTAGGTGCTAGCACTGGCCTCTTCATTGTAGATACTGAATGTATCCTGAGGAAATATTATGGTTGCTGCTACAAAGGTTCCTGTTTTTGCTTATACATCACAGCAGTTTATCACTATGCaaagatatttaaatgtaataattgaTAAGATAATTTGAGATTATAGTAATTAACAGATATGACTGGTCTCTGGCTATGTAAGTATACTGAGCATATGATATCCGCTTGTCTGTTAGGCTGGCATTATACTTTacgtgtactgtatgtgtgcgcAACAATGTTTACTCGACTGTATACTTGACTGTATTTGgggaattaaaagaaaaaagcctAGAACCACTAGGCCTGTTGCTGACCTCATGTCCTTTATTGCCCCATTGGTATTGCATCTTGCAAATGTTAAATTCTTAGGATGTCCACACCCACTGTGATGAGTGACCTCAACGATAGGTGGGCAGCCATGTTGCGCACACATACGTGTAGATACAATAAAATATCTCACAGCCTTAAGATGGCCTTTGTGGCACATGTTCtggttttgttttctgtgtatAGCAttggttcccaaactaggggtagCGACCCCACATAGGGTTGCTTGATTTATAAATGGGATCGCGAGAAACTCACAAAATCTCTTCCTTTgtgatattaatttattttacaaattgatattagaaatatttactgGGAGTCGTAgtcaaacaagccacatttgCATTAAGAGTTGAATTTATTATGCAAGGAATATTCTCATAGTTTTAAGTCACTTTTGGTACACGTGACTGACATAATGTTGGTGTTCTTTCGGCTGTTCCCCTttggggtcgccacagcagagcATTGGTCtacatatttgatttgacaccgtttttacaccggatgcccttcctgactcaaacctccccagttttatccaggg

Function

symbol description
oma1 Predicted to enable metalloendopeptidase activity. Involved in mitochondrial respiratory chain complex assembly. Predicted to be located in mitochondrial inner membrane. Orthologous to human OMA1 (OMA1 zinc metallopeptidase).

NR:

description
metalloendopeptidase OMA1, mitochondrial

GO: NA

KEGG:

id description
K23010 OMA1; metalloendopeptidase OMA1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313881.1 True 3757 mRNA 0.46 8 5079221 5097477

Neighbor

gene id symbol gene type direction distance location
mysm1 mysm1 coding upstream 1303 5066310 ~ 5077918 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 15072 5052030 ~ 5064149 (+)
suco suco,LOC107712873,LOC107687343 coding upstream 30779 4998148 ~ 5048442 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding upstream 139710 4932489 ~ 4939511 (+)
prrc2c prrc2c,LOC107712868 coding upstream 192720 4859323 ~ 4886501 (+)
dab1a dab1,dab1a,LOC107581465 coding downstream 229688 5327165 ~ 5502404 (+)
LOC113545193 NA coding downstream 408362 5505839 ~ 5520633 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding downstream 445479 5542956 ~ 5575570 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 746556 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 766114 5863591 ~ 5868013 (+)
G290030 NA non-coding upstream 171409 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 182834 4896122 ~ 4896387 (+)
G290009 NA non-coding upstream 264425 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 272641 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 276193 4802813 ~ 4803028 (+)
LOC117599804 NA non-coding downstream 49708 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 156040 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 205153 5302630 ~ 5306902 (+)
G290417 NA non-coding downstream 446641 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 482341 5579818 ~ 5588495 (+)
dnm3a dnm3,dnm3a other upstream 99821 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 469620 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 740922 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 769292 4248330 ~ 4309929 (+)
G289531 NA other upstream 1008854 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 637996 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1038443 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1915265 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2680120 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2945909 8043386 ~ 8074444 (+)

Expression


Co-expression Network