LOC117599792


Basic Information

Item Value
gene id LOC117599792
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1203513 ~ 1208039 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313889.1
ATGGTTGATAAAGACCAGGGCGAAATCAATGCCATCTGTAAGGTATTCAACGAGTCAAATGTTCTCCTTTGTTGGTACCATGTAATACAAGCAGTAACTCGTTGGCTTTCAAGATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATTCAAGACAGCACATCATCCAGTTAATGGCAGAGCTGAAATCCTGTTCTACGGAACATGAATTCAAGAGGAAAGCGGAGATGTTTCACTGCCAGTTTAAGAACTTTAAAGATGTCTGGAAGTACTTTAGGAACCACTGGGAGCCAACTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAGCATGGAGACTCTGACACAAACAAGCTAATAGAACGTATCAGAAACCATAGATTGGATCACCTGATTGATGTGCTACTAAACAAGACTGACAAGTACTTCAACATAGTACAGGATTTGCAGTCGGTTGGGAGGGTCTATAACCCTctagaatgcaaaatagaagaaataaagaaatttgcTCAGAGGATGCTAGACATTGGTTGGGCCAAGAGAGTTACAATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313889.1 True 558 mRNA 0.41 5 1203513 1208039

Neighbor

gene id symbol gene type direction distance location
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 167417 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 306227 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 342023 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 370688 832360 ~ 832825 (+)
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 371667 831420 ~ 831846 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 85743 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 132469 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 156045 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 264143 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 268113 1476152 ~ 1478084 (+)
G287872 NA non-coding upstream 19150 1184083 ~ 1184363 (+)
G287817 NA non-coding upstream 196507 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 213078 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 276874 926233 ~ 926639 (+)
G287630 NA non-coding upstream 310009 801623 ~ 893504 (+)
G287891 NA non-coding downstream 33822 1241861 ~ 1242067 (+)
G287962 NA non-coding downstream 226516 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 245536 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 246931 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 247869 1455908 ~ 1456374 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 305103 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 306151 806306 ~ 897362 (+)
G287892 NA other downstream 35018 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 51137 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 150147 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 788081 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 925119 2133158 ~ 2142181 (+)

Expression


Co-expression Network