LOC117599793 (LOC108257824)


Basic Information

Item Value
gene id LOC117599793
gene name LOC108257824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1340508 ~ 1344631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313890.1
AGATCTTTTTACAGAGGAGGAACTTCTTCCTCTCAGTGCTCCTTCGTTCAAAACTATCACCAGACCATGGCCAATTTCAGCTAAACCCAACACTCCACCTCAGGATAGTACAACACCACAAAGTGTGCCCAAGCCTCAGCTGGAAGAATCTGACTCTTCTCTGCCAGTGAAGATGAAAATGCTTAATAATTCAGGGCTTGCATTGGCAAAAACCTTCCAGTCAAccacagaaagcttcatcaaGCTCAGAGCCTTGCAGTCCTCAGCTACCACAGATAACGTCCGAGCCATTTGGCCCACAAAACACACCATACCTCAAACACTCCCTGgaacagaggaagaaagagaggagaagacCACTTCTCAGATGACGATGAACATGGAATCAACTTCAAGTCACATAAAGATGAAGTCTAATTCAGCTTCTttagaaatgacagaaaacatcATACCAAGCACAGTAGCAGCCATCATCAGTCAGTCAGAGGTCACTATGAAAACTTTAACTGAGCAAACTCACAACACTGGAACCATTTCCAGGCAGAATTTCAGTCAGGCCAATGAACAAAACACGCTGTCAAATGCAACTTCATCACCAACCACTCAGAGCCAAGCTGCTACTATTCCAGAAACTTATTCCAATCCAATCACAGATGTGAGAAGCTACATGAAGACCAATGCTGGGATGACAGCTACTACCACAGAGTCTGGCAATACAGGAACAATTGTCATTCTGTCTACATCACATGTAACTGAGGGTGAAAGTGATTCCAGCACAACTGCATCAGTGTCCACAAACAGACTGGTTAATAGTACCACTACAACTATTACCACTGGCAAACCTGACAAACACAATACAGACAGCATTAGTTTGGTTAAAAAACAGCAAGACCCAAAACGAAAGATCATTAAAACtgtggaggatgaggatgttGAGGAGAAACCTCAAAGGCAGCCAGGATATGGCCGTAATGAAGATGCCTGGATGAAAGACCCATTGGCTCGTGACAACAAGATCTACgttgctaattattattatggcaACAACCTGTTGGAGTTTCAGAACATGGATGTCTTTAAACAAGGTCGtttcaccaacttctataagcTGTCCTATAGCTGGCTGGGCACAGGCCATGCAGTCTATGACGGTGCCTTCTTCTTCAACCGTGCTTTCTCACGTGACATCATCAAGTATGACCTCCGGCGGCGACGTGTGGCAGCCTGGACCATGTTGCATGACGCTGCACTGGAGAGTGATGAGGTTTCATCATGGCGATGGAGAGGCCACTCGGATGTGGAGCTGGCTGTAGATGAAAGTGGCCTCTGGGTGATCTACGCTGCACTGGATGACGAAGGTTTCTTACAGGAAGTGATAGTACTGAGCCGTCTGAACCCGGATGACCTGACCACACAGCGAGAAACCACATGGAGGACGGGGCTGAGGCGTGAACGTTATGGCAACTGTTTTATTGTATGTGGGGTCCTGTATGCAACTGATCATCATGGAGAACAGCGGGAGAACAATCTGAGCTATGCCTTTGATACACATACCAATACACAAATGACCCCTCGGCTCCCTTTTGGCAAtaattcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313890.1 True 1597 mRNA 0.46 3 1340508 1344631

Neighbor

gene id symbol gene type direction distance location
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 7681 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 132469 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 304412 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 443222 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 479018 859667 ~ 861490 (+)
olfml2ba LOC108257824 coding downstream 19453 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 127551 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 131521 1476152 ~ 1478084 (+)
lmx1a LOC108257702 coding downstream 177308 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 247933 1592564 ~ 1595352 (+)
G287891 NA non-coding upstream 98441 1241861 ~ 1242067 (+)
G287872 NA non-coding upstream 156145 1184083 ~ 1184363 (+)
G287817 NA non-coding upstream 333502 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 350073 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 413869 926233 ~ 926639 (+)
G287962 NA non-coding downstream 89924 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 108944 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 110339 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 111277 1455908 ~ 1456374 (+)
G288047 NA non-coding downstream 128082 1472713 ~ 1473097 (+)
LOC117599677 NA other upstream 75876 1259176 ~ 1264632 (+)
G287892 NA other upstream 96836 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 442098 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 443146 806306 ~ 897362 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 13555 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 651489 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 788527 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1140405 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2598863 3943494 ~ 3982694 (+)

Expression


Co-expression Network