si:dkey-1j5.4 (LOC108257701)


Basic Information

Item Value
gene id si:dkey-1j5.4
gene name LOC108257701
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1912614 ~ 1915860 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313894.1
atgacctcactgagcaGCGGGTATAGTGGGAGAACAGAAGAAGACCCAGACCTGAGCCTTATGGTGACTCTGCATGGAGCAGATTTGGATTCCCTCCATATGACTATCCCTCCAGGGGAAAACATAATCCAGGAACTTCCAGCAAACATCCTAAGATCTCTCCCCAAACTTGAGAGTGTAAATCTGGAGCGCAATTCAATTAAATCTATACACCCCCAGGCTTTTTCTGGTGCCAGCAGACTGATGCTCCTGAACCTGAATGGAAACCAGTTAACCAGTCTCCCCACAAAGGGTTTCGAAGACCTTCTCAACCTGCGTTTTCTCATGTTGGGCCAAAATCAGATTGCCAGTGTCAAATCTGACATGTTCATTGGCATGAGAAATCTCTCAGATCTAGACCTGCCCATGAACTCTCTTACCACACTTCCACCTAATGCCTTCAAACCTCTCATTGCTCTCAAAGTGCTGGATCTTGCCTTAAACCGTATCCAAAAAATCTCTCCAAAAGCTTTCTTTGGGCTTGAAGAGTTGCTCTTTCTCAATCTGGATAACAATAGGCTGAAGAACATCCAAGCTGGGATTTTCAAGACTGTAAACAACCTGGAGATGTTGGTGCTGGATAATAATCTTCTTTCCACATTAAGTTCATCCATGTTGGAGGGACTGTCAAACCTGCAGGAGCTCTATGTGAGGAAAAACAGAATTACGAGCCTGCCAGCCGATGTTTTTCGCCATACCCCCAAACTTACCCGCGTGGCCCTAAGCGGGAATCAACTTCAAACGATTGATGGGAACATGTTGGCCAACATACAGGGACTGAAGCATGTCTATCTACATGACAACCCATGGAAATGTGACTGCGACATCAACTCTCTGGTACAATACATAGATCAAATCCGGGTGAATCGTTCTCCTCTGGAAAAGCTCTGGTGTGTAAGCCCAGAGGAACACCGTGGCAAACCTATGCACAAACTGAAATCTGACGGCCTGCTCTGTGATGCCTAGTTAGATTCAGTCTCATCTGATATCATGATAGTATAAATGCATGAGATTTTATGTAATTGAAAGGTAAAACTTTACATAATTGCAAGCACAATGACTTTGACAAGACAATGATAGGGGAACTGTTGCTGCAGATAATTGCTATTATTTCTTTCCCACTCAAGTCTGTTATTTTTAGACCACCTGGTGGTGCATATTACTACACCATATGCTCACTTCTGGTAgtgcaaatcttttttttttctcttacacTCTTTTTCATAGAATTGCTggttatttttcatatttcagcattttctttCTGTTAAAGAAGCTAATGTATTATTTGTTCAAGAGGTCTATTTCTTTTGTGTCTTATCTAATCTATACTCTAAGTATAGATTCTCTAAGTATAGAAGTATTGATGATTAATCAAATATTTTAGGGGAAAGATACCCCATTTAAATGACTGAAGGTTTTGTTAGATGaaaatatcttgttattttcaagtaaaagaaaatattatggAATTCCTAACATTTTACTAATCAGATAATAGTATATGCATCCTtgtaatccttttttt

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313894.1 True 1567 mRNA 0.40 3 1912614 1915860

Neighbor

gene id symbol gene type direction distance location
lbr lbr coding upstream 10621 1892769 ~ 1901993 (+)
enah enah coding upstream 23421 1824985 ~ 1889193 (+)
ppil6 ppil6 coding upstream 111696 1786487 ~ 1800918 (+)
ak9 ak9 coding upstream 131337 1761934 ~ 1781277 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding upstream 154313 1730526 ~ 1758301 (+)
tnfrsf21 tnfrsf21 coding downstream 176615 2092475 ~ 2119917 (+)
LOC117599673 NA coding downstream 206701 2122561 ~ 2131271 (+)
adgrf3b adgrf1 coding downstream 235374 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 246571 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 273899 2189759 ~ 2212201 (+)
G288171 LOC108257608 non-coding upstream 214447 1695908 ~ 1698167 (+)
G288134 NA non-coding upstream 314021 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 345297 1566196 ~ 1567317 (+)
G288048 NA non-coding upstream 437165 1473930 ~ 1475449 (+)
G288047 NA non-coding upstream 439517 1472713 ~ 1473097 (+)
G288192 NA non-coding downstream 18717 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 79600 1995460 ~ 1995679 (+)
G288225 NA non-coding downstream 111009 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 155174 2071034 ~ 2071276 (+)
LOC117599781 NA non-coding downstream 231355 2147215 ~ 2151238 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 552498 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 647982 1259176 ~ 1264632 (+)
G287892 NA other upstream 668942 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 1014204 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 80260 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 217298 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 569176 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2027634 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2072192 3988052 ~ 3988123 (+)

Expression


Co-expression Network