LOC117599795 (LOC107568747)


Basic Information

Item Value
gene id LOC117599795
gene name LOC107568747
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3878822 ~ 3885661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313897.1
ATGAAGAGGTGGAATGATGTATATGTGACACAATTTGGGAAGTACAAAGGGAAGTCCTTCCGGTGGCTATTGGAGAATGATATTGGCTACTCTTTGTACTTGTCCAGTAAGGTTGAGGAGGAAGAACGGGCTGGACAGTTCAACCCAGAGGGTCCTTGCAAGGATAGCCTCCTTTCCTTTCTTGAATACTCAAGAAGCTTTAAGGAAATTGAGGATCTCCGGCGATACCTTTCAGAGAGGCCAGACCCAGTACCAGTTTTGTCAGAGGATGACAATGTTGTTGGATTTGGGGCACGAGCACAAGACACCTGGAGGAAGATCTGGAATACCAGAGCTGATGGGTATGCTGCCTTTATAATGGGGAAGAGCGGTGTTCCAGGAAGTAAAATGTACCGCTTACAGCAATATCTTTTAAAGCAGCAAAGACAGGTGACCACAGCCCCTTCTGCTACACCTTCACCCTCACCATCAACTCCCTCTGCACCTTCCACTTCATGCCTTTCCTCTGATCATCCAGtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCCACAGCCACTGCGTGTCCAGTCTTCTCTGCAGCAGGAGTGTTCTTGCCTGTTCTAAAAATTGCGTTCTTTTTTCTGCCACAGCCACCATCAAGACCACATGCTGTCTGCCATCCTCACACACCACCACCTCCTTTGCCTAGCACTTCCTCTCAGTGCAAATCCCCTGCATCACTGCCCCGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCTACCAGCTGCTCAGTCAGTACCTGCACCAGTGccctccacacagacaggagccCCTGTGTCCAGTGACATGCAAGATATTAGCCGCTGGAACTGCTCCTGCCATCACAAAATCTGGATGAAAACAGAGATGGAAGCCCTGGGGCTCTGGCCAGTATCACGACCGGTTGTTTCCTCTGGTGCGGGAAGGCCCAGGGTGATTCTTGGTACCAGAGGGCAATATTACATCCTTTCCTCTCGACTGTGCTGTAAAGCATGCAAAAAATACTGGTTCTCTGATAAACCCCAGTGGCTAGACATGCTGCCAAAGCGGTTCTGTAACATCTTGCCAGCCTTCCTCACCCATAAGAAGGCCATCTGTAAAACAGTGATGGATGAACTGTGGCGCTCTGGTAAATCACCTAATGATATGGCCAACCAGCTGTCTGAGGTGCTTCACCTGAAGTACGAAAGAGCCCACCTAGCCTACCTGCTCAGCATGCAGAACATCAGGGATGCTGATGGACAGATGACCATCACTGGGGCACTGAGGAAGGATTACACACCAGCACTGTTTGGGGGTTATGAGGACACTGATGGGTGGCGTGGGGCGTCTGTGACTGCACACTATCTGGTGGAGTGCCTTCTTCAAGAATATCAGAGGCAGGAGGCAGCTCTCACTCAGGTCCTACAAGTCACTTTTGGACAGGTGTTCAGGTCTGATCACACACGCAAAGTTGCTAGAAAAGTGACGCTCACATCTGGCACAATGTCATCCTATGCTGTGATGAATGAGAACTGGATGATCCTGTCCTGGGTGATGCTGCAGTCTGAGAGTGAGCAGTCATTAGAGTCAATGTACTGTGGGCTGGCCAGTCGCTATAGTGCTGCTGCTATCCCCAAGGCCAAGTACCAGTGGGTGGACAGGGACTGCTTTGCTGCTTTCAGAGTCATGGACCCAGCACCTTATGAGCACCTGCAATGGGATGCCTGGAGGACCACTGAAGCTATCGTGGCAGAGGTTACTGCAGGGAACCTCAGGAATTTATGTGCCTCTTGCCTGAAGTATAATGAGGACATCATTGTAAAGCTGGACTTATTTCACTGCATGCGGCGGTTCACCAgggagtgtgtgtcagagcacCATCCTCTGTATAGCTCCTTCTGCCATTTTACCTTCTCTGTAGCGGATCAGAGTGACCTggagaaactgaaaaatgcaTACAGATTCTGTGGTATTGAGCCTGCTAATCCCCCCAAGCAGCATATCAGAGAGCACTGCAGGACAAAAGTTCCACATCCCAGAGAGCTGGTCCAGAGGGTGGAAGAGGTGCTTCAACATTTCCATCTAGCAAAGGATCCCAACAACATCCTCCTTTTTAAACCCTCAATGCTAAAGGTGTGGTGGATTCAGCGTGTACACATCCTTAGGGGCTGCCTGAGTGACCCTGAGGTGGAGGAAGGAATCCTCTACAGACATGGGGGGATGTTACAGCTCAATCATGTAAAGGGTGAAGGAGCTGCTGTGCCCATTTGGATCCCTGTCAGAGGCACCTCACAGCAGGAGGGGTTTCATTTCCACCAAGCTCAGTGGGTAACAGGTAATCGTGTCTCTCCTGAACTGTTCCAGGCACAGGGAATGACTGGGGTGGCACGCTGGAATTATCAGCGGCTGGTGGACCTGAAGCAGCCGGGGGTCGTCCTACCTGCAGTGTTTGACCCTGTGTTAATGATGGAGTTAAACAGGGCCTCTGTGAGAGTGACAGGGCAGCCCAAATATCCAGCCTTGCATACCTCCAGCAGGGACACAGGGGAGAAGTTTGGCCTACAGTATGTGGAGCCAGGCTGTCGACCAGTGCCTCTTGACAAACATAAGTGCAAGAAGTCCGCCCTAGGAGATGTGGAGATTGAAGAGGAGTCTTCATCTGGCTTTGAGAATGGTTAGATGATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313897.1 True 2746 mRNA 0.51 9 3878822 3885661

Neighbor

gene id symbol gene type direction distance location
kita kit coding upstream 70073 3781390 ~ 3808749 (+)
pdgfra pdgfra coding upstream 125391 3731642 ~ 3753431 (+)
gsx2 gsx2 coding upstream 158334 3718106 ~ 3720488 (+)
fip1l1a LOC108257999 coding upstream 293817 3554737 ~ 3585005 (+)
rasl11b rasl11b coding upstream 476147 3399115 ~ 3402675 (+)
mgst3a mgst3 coding downstream 11354 3897015 ~ 3901866 (+)
LOC113546823 LOC108257899 coding downstream 20033 3905694 ~ 3917080 (+)
pfas pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297 coding downstream 106006 3991667 ~ 4016550 (+)
hook1 hook1 coding downstream 139021 4024682 ~ 4045273 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding downstream 216008 4101669 ~ 4115455 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding upstream 34143 3843115 ~ 3844679 (+)
G289363 NA non-coding upstream 139608 3710701 ~ 3739214 (+)
G289351 NA non-coding upstream 190906 3623064 ~ 3687916 (+)
G289240 NA non-coding upstream 384488 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 494940 3383677 ~ 3383882 (+)
G289515 NA non-coding downstream 56613 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 62535 3948196 ~ 3948458 (+)
G289522 NA non-coding downstream 99086 3984747 ~ 4350564 (+)
G289533 NA non-coding downstream 161548 4047209 ~ 4055985 (+)
G289532 NA non-coding downstream 175083 4060744 ~ 4066425 (+)
cnstb LOC108257742 other upstream 1382770 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1736641 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1857559 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2518706 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2614190 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 57833 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 102391 3988052 ~ 3988123 (+)
G289531 NA other downstream 168796 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 362669 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 443171 4328832 ~ 4338299 (+)

Expression


Co-expression Network