LOC117599796


Basic Information

Item Value
gene id LOC117599796
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4641793 ~ 4642356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313899.1
ATGGCGGTCGCCATCCTGTGTGTTTGGGCTACATATTGCTCTGTTCTTGCTCCAGTCCGTGCGTCTACCCCCAAGTCTCCAGTCCTCGAATCTGCTCCCGAGCCTGCTCCAGTCCTCGAATCCGCTCCCGACCCCGCTCCAGTCCATGAGTCTGCTCCAGAGCCCATTCCAGCTCCTGAGGTGGCAGCTCCCGCTGCAGAACCTCCCAGGTTGTTGGCCTCTGCATCAGCTCCTGAGGTGGCAGCTCCCACTGCAGAACCTCTCAAATCAGCGGCGTCCATTCCAGCTCCTACCGAGGTGGCAGTTTCCACTGCAGAACCTCTCGAGTCGTCTGTGTCCGCTTCTGAACCCTCTGCCTGCCCTGTCTCGCCAAGGAGGCTGTCTCTGAGCTCTTCGCCTGCCCTGTCACGGCCAAGGAGGCCGTCCCCCAGCTCTTCGCCTGCCCTGTCCCGGCCAAGAAAGCCGTCTATGAACTCTTTGCCTGTTCTGTTACGGTCAAGGAGACCCACTGTGAACTCTCTGACTGTCCTGTCACGGCCATGGAGGCCGTCTGTGAACTCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313899.1 True 564 mRNA 0.60 1 4641793 4642356

Neighbor

gene id symbol gene type direction distance location
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 60012 4561161 ~ 4581781 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 84306 4453316 ~ 4557487 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 190871 4447647 ~ 4450922 (+)
echdc2 echdc2,LOC107669145 coding upstream 209438 4425634 ~ 4432355 (+)
LOC113545214 LOC108257527 coding upstream 221960 4407768 ~ 4419833 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 174331 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 180682 4823038 ~ 4831944 (+)
LOC117599802 LOC108257967 coding downstream 192730 4835086 ~ 4846034 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 205225 4847581 ~ 4854725 (+)
prrc2c prrc2c,LOC107712868 coding downstream 216967 4859323 ~ 4886501 (+)
LOC117599674 NA non-coding upstream 13956 4624142 ~ 4627837 (+)
G289866 angptl1,angptl1a non-coding upstream 101953 4529928 ~ 4539840 (+)
G289831 NA non-coding upstream 207003 4433235 ~ 4434790 (+)
G289521 NA non-coding upstream 278705 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 288992 4350748 ~ 4352801 (+)
LOC113545162 NA non-coding downstream 62306 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 88729 4731085 ~ 4731312 (+)
G289995 NA non-coding downstream 113150 4755506 ~ 4755735 (+)
G290004 NA non-coding downstream 160457 4802813 ~ 4803028 (+)
G290005 NA non-coding downstream 162204 4804560 ~ 4806580 (+)
LOC113545190 NA other upstream 32192 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 303494 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 331864 4248330 ~ 4309929 (+)
G289531 NA other upstream 571426 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 653670 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 299595 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1093117 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1493564 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2370386 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 3135241 7777597 ~ 7782008 (+)

Expression


Co-expression Network