LOC113545193



Basic Information


Item Value
gene id LOC113545193
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5505839 ~ 5520633 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034313904.1
TCTGTCATACCCGGGCGGGACTCGTCTAACAGGACCAAGTGCTTTTCAGTGATTTACTCGTGAATGGTCCATCCGCCTTCATTCCAACAACACAGTCGTATAGCTTGGGTCACAAACATTACTTTGGATTTGTTTTGCTTATACGTATGGTATCTCTTGTTGGATTGGATTAATTTACAGTGGGTAATTTGTTGGATTAACAATGAGAAGACAGAGTTGATGGTGCTGTTTCTTTGAAAAAGGATTACAAATTGGTACCACATACGATGGAACAGGGTGAAGACGTGAAAGTTAAGACCCTGAGGGAAAAATTCCAGAATGATGAATCTTTGAAGATCCGAATCAAACCTGCCATCCCAGAGAAACCCAAAACTATCCCCCCAGTATCTCCCAACACAAAAATCAGCAACCCCCTAATTGCATCAATCAATTCAGCTGTAGAGAACAGATTAGCCCCTCGTGTGGTCTTTAAAGATGACAAAAAGAACCACCAAGTTTCTCAACCTGAAAACTCAACAGTAAAGGCAAAGCCTATTTTGCTGGATAAGAACCAGAAGAAGGAAGCAGATCTTATCAAACAAGCCCTGAAAGATAAGAAGATTCAGCCCATGAGTCCTGTTATTCCGGTCTTAGAACAGACACCCAAAACTGAGTCTATCCAAAAGCCCCAAGTTTTGGAGAGACCAGCCAAAGTCTCTACACCATTCAAGAAGTCCGTATTCAACAAGACAGacaagaatgagaaagagaagacAAACCCCTCAGAATGGGATGTACCAGCTACCCCTGTCCTTGATCATTCAGATTCTACCATTTCCACTCCTGCCAAGGCTGAGGCCACAGTTAATAAGCCTTTGGTTCCCAAAGCTCTTGTTCCACCTGTTAGAGCGAACCCTGCTATCTCTGCTCCAGTTATTTCTCCTCCTGCAGTTGCAGTCTCAAAACCTCCTGCCCTGACAGTTCCAGAACCTGTTTCCCAAAATGGTCCTCAAATTGAGAACCCAAGGCCAGAAATTCCTATTAGACTTAATTCCAATGTAACAAGTCCAACAGCAGATATATTTTCAAATGGTTTACCAAAGGATCCAACCTCCATTCCAGAAATCTCTGATATTCTTGATATGGATATTCCACCTCCAATTATTCCCGAGGACTTTTCTGATGGTGGCACTTCTGTTCTAGATATATTTGCCAATGTTACTCCTGAGCATTCATTTCCTGGGgcttctctttctgtttctccagTGTCCAGCAGTCCAGCTCTATCTCGTACAGACACCCCTATTCCAGCAATAGAAACCCCAGATTCAAATGCTGCTTTTACATTCAGTCCTTCACCAACATGTTTAACTCCATCAACACATGTCAAGTCAATGGAAGAAAACAGGGTGACTGAATCCCACAAAGCAATTGACCACACAGAGAAGCCCTTGGAAGTTCCACTGTCCAGCTCACCCAAGCCCATTTCAGTGGTCTCTGCCCTTGCGAGAGCTGAAGAGATGACCCCTGTTAAGCATAACCATTGTGATCAACGACTGCTTACTCTTTTGGAAAAGGCTAAACGAAAGTCTACATCAGGCTCTCAGTCATCCACACCTGAAATTCTGCCTGTACTTGAGACAGATCTGCCTAGCAATGCTCCACTTGAGCCACCTGAGACAGCCCATGCTGAACCATTCTCACATGTGGAGGTCCCAAATGCCCCTGAAACTCTTGTGACTCTTCCTGATTTCCCCCCTGTTGACTATGAGAACAAGGCTGAAGAAGCACCAGCAAGAGAATATAACACCCAGCCCTATGAAACAGTCCTTAATAAGCAGGATCACAGGAAAAGTTCACCTGCTCCGAAAATGGTGATTGTGCAAAGACCTACTGTGCCTCCTCCACCTCCCCCTAGAAAGCCCCAGTCGACTGTGTCTAACGGTGGCCTCACACCAGAGAAACCACCTCAGTCCCCAAGCACAGATACGCAGTCCAGCATTCTGCCAAGTCAGCCCCTGGAGGACAATGGAATCATCTCAGCTCCTGCAGATTTTACTTCAGAGGATTCAGCATATGAAGATTCAGAAATTTGGGATCCATCTGAAACAGTTGGCTCACAAGCCGAAGCTCCAGATTATGGAAATCCTGGACCATCAGTTCATGAGGAAGCATTTTTGGAACACTTAAATCTAGAACATCAGATGCCAAATATGGACACTGCAGATGCTATGCTTCCCAGGACAGTGACACCTGAACATTCAGATTCAGGACCAGACTCTCTTTTCAATCTAACACTCCCATCTCCATCAGGAAAACAATTAAACTACAGCAGCACAGAGTTGGAAGACCTGGCGGCCAGCAAGAAAAGTAAAACGCAAAAGAAACAACGCAAAGGATCTCCTATGAATCCATATGCTGATACACCTGTTGTGaCAGAGGAGATCCCCAAGAAAGCACTGTTTTCCAAaaaGAACTCTGTGTCAGATGAAAAGGAGCTGaagtcaaaagaaaaacaaaggcagaaggacaaagagaaagaaaaggaaaaagaaaaagaaaagaaggagctgaaggaaaaggaaaagaaggagcagaaggaaaaagaaaaggagcagAAGGAtaagaaaaaagagcaaaaggagaaggaaaaagagaaagaaaagaaagaaaatgaaattaagaaaaaattcAAGATCACAGGAGAGGAGGAGGCCTTGTACCAAGCTAAAGTGACAGAGACCACTAAGGGGCGTAAAGATGATCTGGCAATAAAAGCTGGAGAGATCGTCAGCATTATTCGCACCACAGACTGCCCTAAAGGAAAATGGCTGGCCAGGGACAGTACAAACAAATATGGCTATATCCCGGTGGAGAGTGTGGAGTTGAATATTCAGGAGATGATTGTGCTGGGGAATAAAGCTAAAGCTACTAACAGGGCCAGCGTTAATGGGATCACCGACCCAGATTCCCCCAGTACGGACATAATATCCTCACCTCATTATAGCCTGAACCAAGAAAGCTTTGAAGATGACAGTGAGGAGtggggtgatgatgatgagtcaGTTTTCCCACCAGCTCACACCACAGATCTAGTACTGAACCAGAGGGTGGCTTCTCCAGACGCTGGTCCTGAGCCAGTTCCAGCTCTGCCAGCACATTCTGATAGAACTGATAATGTTCAAGCAGGACAAGAAGCGCTTCATAAACTGACGACCTTCTTTGCGCAGCCGAAAGTGCCCACACTGCAGAACAAAGCACCAAGCAAAGAACAAGAGCCACTTGCTGTCAGTGCTGAGGAACCAGTCAGTTcACTCAAACAGGAAATAGATCTGCAGCTCCTTCCTCCTCCGGATCTGTATGCTGACATCATCGTGGGGTGAACAGAACACATTTATTGCATTTGACATGTGATGGAAAGGGATTTTGAAAGACTGCAATGCATGCTTCGTTCTGTCTGATAGTGCATTGTGAAAGAACACGACTGCAACTCTTCCCCCCTGGCTTATGTGAAAGAATGCTGTCAGGCGTGTAGAAAAATGAGGCGTGGGTATGCATACGGTGTACACATGGTTCAAGGTGGCGTTCATTTAACTCCCATTTCACATGAGAAGGACTTTGAATGGAGGAATATACAGTAACTCGTTCACTGTGCAATGTTATTACTTTCCTTCTGGAACCTGGGTGTTTTTACTTCCACCATGCTATCCTGAGTAATCCGATGAAAGATTCCTTTAGATGATGTTAGTTGTAAAACAGCTGTGTAATACAAAGAGCTTGTAAGAAACAAAGCTAAACTGggaaaaaatcaaaagcaaCACGGAACCGATCATTTGGTTGAGGTTCCACTAACACTAAAAGATATTCTGTTTAAGACTTTTAAAATCATGTTGTGTAATTGTATTATTAGCTATTTTCACGTAACCATGAGCCTCAGTTTATATTAAAGTATTCTCAGCACACAGTCTTTACAAAACCTAATCACTCCTGAGAGAAAGATGGATTGATCCCTTTTGTACTTGATAGTATTACATCCATGTAgttatattattaaatgtgtgtgtggtgtatgtcTCACCTGCTTTAAACCACCTAAGTGTTTGGATAATGGTTactcgtttaaaaaaaaaggttaaacagTTTAGATTACACATAGAGGTATAGTTTTGCAAGTCCTACTTCTTCATGAATGAATGGACCTGGCACTCAGGtaatgataaaaacacaaaaatacatgaACCAATATGTTGTAATATGGTTTGATAATCCATCCTAGCATATCTtgcttatatttatttgtactgctaacatgaaattattttgcttttccAATAACCACAAGACAATATGCATTTATATGCTcaatacacattttcttttta

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034313904.1 True 4361 mRNA 0.43 19 5505839 5520633

Neighbor


gene id symbol gene type direction distance location
dab1a dab1,dab1a,LOC107581465 coding upstream 3435 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 408362 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 427921 5066310 ~ 5077918 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 441690 5052030 ~ 5064149 (+)
suco suco,LOC107712873,LOC107687343 coding upstream 457397 4998148 ~ 5048442 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding downstream 22323 5542956 ~ 5575570 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 323400 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 342958 5863591 ~ 5868013 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 354555 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 384061 5904694 ~ 5945486 (+)
LOC113545370 NA non-coding upstream 198937 5302630 ~ 5306902 (+)
G290192 NA non-coding upstream 252116 5253517 ~ 5253723 (+)
LOC117599804 NA non-coding upstream 354914 5147185 ~ 5150925 (+)
G290030 NA non-coding upstream 598027 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 609452 4896122 ~ 4896387 (+)
G290417 NA non-coding downstream 23485 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 59185 5579818 ~ 5588495 (+)
G290419 NA non-coding downstream 126744 5647377 ~ 5655687 (+)
G290562 NA non-coding downstream 212098 5732731 ~ 5734300 (+)
G290566 NA non-coding downstream 281165 5801798 ~ 5804340 (+)
dnm3a dnm3,dnm3a other upstream 526439 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 896238 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1167540 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1195910 4248330 ~ 4309929 (+)
G289531 NA other upstream 1435472 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 214840 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 615287 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1492109 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2256964 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2522753 8043386 ~ 8074444 (+)

Expression



Co-expression Network