LOC117599802 (LOC108257967)


Basic Information

Item Value
gene id LOC117599802
gene name LOC108257967
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4835086 ~ 4846034 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313935.1
GTTCTTGGCTCTGCCCTTTGGCAGTCTAGGAAGTCTGAGAAAAACAGCAGAAGTTCCTGTATAATTTTTGGAGCTTAGTTTGTATCGTAATCTCGTCAGCAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCGATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGgtATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTGGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTACACGTCTGAACGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGCTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGAATGCTCCACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGTGAAACCAAACGTGCGAGAGTTCCGAGGCTCGACTGTTGTATTTGATAATGAGGCAATCGAAGATGGGATAGATGCAGTTATCTTCTGTACAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTGTAACGGAAATGCAGGCACGATGGGCCACCCGAGTCTTTAAAGGTTTAAACCGACTTCCTCCCGTATCAATAATGCACAAGATCACAGAGAAAGATTGGAAGGCAAAAATGAAAAGATACTCTTGTCCAAAGAAAGCTACTCTCGAGGTGGGCTTTATCCCTTATTTGGATTCCATCGCACAGGAAATCGGTGTGCGTCCCAACCTCTTGTGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCTGCACCCCGTACCAGTTTCGGCTGTGTGGGCCGGGTCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAGTGGGAGCGTGTAGCCCAGCCATTCAAGACACGCCCCATTCCAGAGCACAAAACTTCTGGACTACACTACTGGCTGAGTCTGGCAGGAGGGGTGATGCTGATTTTTGCTCTCATTCAATTGCAGAAGAGAAATAAACTTTTCTTCAGTGTCTGATTACATATAGTATGGCCTCCATTGCATAGTCTGCTCTAGAGATTGCATGTATGTAGATTGATTTCTACTCAGTTATTGTAACTTGAAATGGTATttgtacacaaaaaaaatcatgtgaaaggTTTGCTGAGCTGCATTTCTAGCATGTGACCGTTGGTGAACTGCATGGTTTTAGCCCTGCCACAtattggattgaggtctgggctttgagTGGTCATTCTAAAATATTCAAGTTGCTGGTTTTAAACCAATTAGCTGTGCTGAGATTGGAACATCACCAAAATAATATGATGACCTCTTCCACTGAAGGACTGACAAAATGTGCGTaacaacagatgggctacagtaaTAGTATATGTACAAAGTGATCTATGGTATCGATGGATCTTATATTAAATGGCCTGTGAGTGTATAAACAAGGTATctgtggcctaatggatagagaatcggacttgcaacctgaaggtgaacctgaaggtcgtgggtttgagccTCAgatccagcagggattgtaggtggggggagtgaatgaccagcgc
>XM_034313936.1
TGAGTATGTATCGCACTGGAGCATGTAACATTACACACCATCTTCCCAGCGTTATCAAGATTTGGGACTTTCCAAAACAATCACTGTCACTGGACAGAGACAAGGGCAATTTCATCCAAAAAACAAGACATGGAAACAAGGAACATGAGAATCAAGTAAACACAACTCAAAAACCTGGAAAACAAATGAGAATTGGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGgtATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTGGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTACACGTCTGAACGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGCTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGAATGCTCCACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGTGAAACCAAACGTGCGAGAGTTCCGAGGCTCGACTGTTGTATTTGATAATGAGGCAATCGAAGATGGGATAGATGCAGTTATCTTCTGTACAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTGTAACGGAAATGCAGGCACGATGGGCCACCCGAGTCTTTAAAGGTTTAAACCGACTTCCTCCCGTATCAATAATGCACAAGATCACAGAGAAAGATTGGAAGGCAAAAATGAAAAGATACTCTTGTCCAAAGAAAGCTACTCTCGAGGTGGGCTTTATCCCTTATTTGGATTCCATCGCACAGGAAATCGGTGTGCGTCCCAACCTCTTGTGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCTGCACCCCGTACCAGTTTCGGCTGTGTGGGCCGGGTCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAGTGGGAGCGTGTAGCCCAGCCATTCAAGACACGCCCCATTCCAGAGCACAAAACTTCTGGACTACACTACTGGCTGAGTCTGGCAGGAGGGGTGATGCTGATTTTTGCTCTCATTCAATTGCAGAAGAGAAATAAACTTTTCTTCAGTGTCTGATTACATATAGTATGGCCTCCATTGCATAGTCTGCTCTAGAGATTGCATGTATGTAGATTGATTTCTACTCAGTTATTGTAACTTGAAATGGTATttgtacacaaaaaaaatcatgtgaaaggTTTGCTGAGCTGCATTTCTAGCATGTGACCGTTGGTGAACTGCATGGTTTTAGCCCTGCCACAtattggattgaggtctgggctttgagTGGTCATTCTAAAATATTCAAGTTGCTGGTTTTAAACCAATTAGCTGTGCTGAGATTGGAACATCACCAAAATAATATGATGACCTCTTCCACTGAAGGACTGACAAAATGTGCGTaacaacagatgggctacagtaaTAGTATATGTACAAAGTGATCTATGGTATCGATGGATCTTATATTAAATGGCCTGTGAGTGTATAAACAAGGTATctgtggcctaatggatagagaatcggacttgcaacctgaaggtgaacctgaaggtcgtgggtttgagccTCAgatccagcagggattgtaggtggggggagtgaatgaccagcgc
>XM_034313938.1
GTTCTTGGCTCTGCCCTTTGGCAGTCTAGGAAGTCTGAGAAAAACAGCAGAAGTTCCTGTATAATTTTTGGAGCTTAGTTTGTATCGTAATCTCGTCAGCAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCGATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGgtATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTGGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTACACGTCTGAACGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGCTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGAATGCTCCACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTGTAACGGAAATGCAGGCACGATGGGCCACCCG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313935.1 True 2280 mRNA 0.48 9 4835086 4846034
XM_034313936.1 False 2232 mRNA 0.47 8 4835909 4846034
XM_034313938.1 False 1193 mRNA 0.50 8 4835086 4844480

Neighbor

gene id symbol gene type direction distance location
LOC113545285 LOC108257967 coding upstream 3142 4823038 ~ 4831944 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding upstream 13075 4816687 ~ 4822011 (+)
LOC117599796 NA coding upstream 192730 4641793 ~ 4642356 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 253305 4561161 ~ 4581781 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 277599 4453316 ~ 4557487 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 1547 4847581 ~ 4854725 (+)
prrc2c prrc2c,LOC107712868 coding downstream 13289 4859323 ~ 4886501 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding downstream 86455 4932489 ~ 4939511 (+)
suco suco,LOC107712873,LOC107687343 coding downstream 152114 4998148 ~ 5048442 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding downstream 205996 5052030 ~ 5064149 (+)
G290009 NA non-coding upstream 20290 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 28506 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 32058 4802813 ~ 4803028 (+)
G289995 NA non-coding upstream 79351 4755506 ~ 4755735 (+)
G289989 NA non-coding upstream 103774 4731085 ~ 4731312 (+)
G290028 NA non-coding downstream 50088 4896122 ~ 4896387 (+)
G290030 NA non-coding downstream 52933 4898967 ~ 4907812 (+)
LOC117599804 NA non-coding downstream 301151 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 407483 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 456596 5302630 ~ 5306902 (+)
LOC113545190 NA other upstream 225485 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 496787 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 525157 4248330 ~ 4309929 (+)
G289531 NA other upstream 764719 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 846963 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 95917 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 889439 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1289886 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2166708 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2931563 7777597 ~ 7782008 (+)

Expression


Co-expression Network