LOC113525588


Basic Information

Item Value
gene id LOC113525588
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20932603 ~ 20947358 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402683.2
GCAGCatggctagttagctaacatagctagctagtgttgTTAGCAAACAGAGCTACTGTTAGCTTGCATCAGTAACAACCAGCCCAATGAAATCAGGCTGAATTTTCTGTTCTTCTCCTCAGAGATGAAGGTTGTGTTGCAGCTTCTGGCTGCTCAGGTGGCACTTTGGATTGTGGACTTTACGCTGAAGAAGACTAGTTTAAAGTGGACTTGTTTCTGTGACTCTGAGAGGAAGTGGAGATCTCGACTCACAGCATTATAATAAAGCAGCTGTGCTGTGACAGGAAGTGATTCTCCTTCACCAGATGGCTGGGTGACACTTTCAACATGACGAGACGCCACCGCTCGTGGTTTACGGTACATCAGGAGTGTTTCCACGCTGAACGATGGCTTACACACCTGTCgtctatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattccaaAGTGCATGATGGCACTAGAAAGTGGAGCATCTGCTTTTATGCAAATActgaacagaaaagtgtttaatCTGAGCTGAGCTGGCGGTGTTGCAGGAGTGTAACGCGACGCTACTGTCTGTACCTCTGCCTGTCTCAGtctagaacacattatctgttcattctgtctttatttaaaacaaaatctgtTTAATGCCTGACACTGTGCTGCAGCCCTGTTTCTGATCCACAGTCCATCATTTAGCTCCTCGTATAGAAAACATTACACTGTTTAGAGTTGCTCTGGATGCCTCTACACTGAGGTTACGCTACAATTAATCAGGATTCAAGCATCAGCGACTGCAGCGATGGAAACAGTGGCctgaaaaaatgtttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402683.2 True 824 lncRNA 0.45 3 20932603 20947358

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_17 NA coding downstream 182032 20750500 ~ 20750571 (-)
LOC113524743 LOC108258194 coding downstream 182463 20742070 ~ 20750140 (-)
LOC113524752 NA coding downstream 279391 20613722 ~ 20653212 (-)
LOC113524753 NA coding downstream 321334 20593441 ~ 20611269 (-)
LOC117599679 LOC108258211 coding downstream 340817 20584667 ~ 20591786 (-)
LOC117595662 LOC108258028 coding upstream 37830 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 48443 20995801 ~ 20999074 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding upstream 146119 21093477 ~ 21112429 (-)
LOC117599722 LOC108257668,LOC108270747,LOC108261406,LOC108263642,LOC108273692,LOC108270753 coding upstream 172590 21119948 ~ 21126084 (-)
LOC113524826 LOC108270753,LOC108273691,LOC108261257,LOC108257668,LOC108260129 coding upstream 188219 21135577 ~ 21171717 (-)
G298906 flrt2,LOC108258011 non-coding downstream 43951 20754972 ~ 20888652 (-)
G298890 LOC108258199 non-coding downstream 202593 20705477 ~ 20730010 (-)
G298878 NA non-coding downstream 255093 20676043 ~ 20677510 (-)
LOC117599711 NA non-coding downstream 286212 20645389 ~ 20646391 (-)
G298823 NA non-coding downstream 431463 20492009 ~ 20501140 (-)
G298934 NA non-coding upstream 2484 20949842 ~ 20950072 (-)
trnai-uau_9 NA non-coding upstream 10273 20957631 ~ 20957723 (-)
trnar-ucu_11 NA non-coding upstream 12138 20959496 ~ 20959588 (-)
LOC113524815 NA non-coding upstream 69304 21016662 ~ 21020147 (-)
LOC113524835 NA non-coding upstream 70715 21018073 ~ 21018852 (-)
G298875 NA other downstream 268063 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 490311 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 553698 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 554227 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 562324 20370208 ~ 20370279 (-)
G299022 NA other upstream 125568 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 644916 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1024723 21972081 ~ 22067610 (-)
G299449 NA other upstream 1048756 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 1077258 22024616 ~ 22032359 (-)

Expression


Co-expression Network