LOC113545343


Basic Information

Item Value
gene id LOC113545343
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7610487 ~ 7614980 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404600.2
TTTGTAAGCCACCTTGAAACCCAAGCTGCCTCAAATAGCAACATCTTTCAGCAGCAGGTCCTTGCTAAAGCATTAGCTGCAACTCGATCTGGTCCTCAAACAGAGCTTTGTTATTGGGTAAATAAAGGGCAGCTGGAGAGCTGAAGAAATGAACATCTGAGCCACCTACAGAGGGCACTAAAGGAGTGAGAATTTATACAGTGGTGTTTTGAAATGCAACAGACTGACAGAatCTACCTGGAAGCCAGCATGCTGTGGGATTCACTGTTGGAGAATTGCTGTGCTCAGTGAGCCATTAGCACCATAACGAAGATACAGATCTGTCCCATCCCTTTCTGCCTGAATTCACCCATAGTGGCGCATCCCAGAGCAGGGCATGCCAACACTGTCTCAGGTGACCAACACTAAAGAATGAGAACAATACAGGAAACCCATACAACCCAGAAGATGAAGTGGAAAAGAAAAGCAGTATGTGTTAGAGTAAAAgGAGAAGATGTTTGGAGTAAGGGAGCTACCTGGTGACCTAACTGCTCCTTCAGTTGATTCTAACACAACACAGGATGCCAAATGCCTCTGACCTTGGATTGAAATAAACTCAGCCCAGTATGGAATGGTAACCCCCACTCCCCCTGCCTTCCTGCATTCTCCCCTCTCCTCCCCCACCTGCAAACAGTCCCCTGGCACATGCTCCTGATCCAGTGTTTACATGATCACTTCCATTGCGATGGCAATGCCTCCAGGACAAGAGTGATGGAGTGAGCTCCTGCTGGTCAAAGACATAAACAAAGGCACAGATTCACATACTgatgtgcatacacacacatgcatacatgcaaatacacacacaaaaatatatgcACGTTATGTAGTTCTGTGCACAAAGGTCCTGTATTGGGTCCTGAAGGAAGGATATTTTGTGCATATGATAAGACTTTAATTTGATAAGAGACATACCCAGCATCCTGTGCATAATAACACTGAAAACTGAACTCACAGGAAAAGCTGAGATTCAGTTTCCTGTTAGTGATGTGAGGGCACTTACTAAACTAATAAAGatcaaaaataaacatctttttttattaattatgatCCTTAGAATTTCCATCCAAATTTATGTTATAGTGGCAGTAGTGGGAGGTAGGGAGGCAAGCACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404600.2 True 1155 lncRNA 0.44 4 7610487 7614980

Neighbor

gene id symbol gene type direction distance location
trnac-gca_25 NA coding upstream 21048 7589368 ~ 7589439 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding upstream 108049 7478282 ~ 7502438 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 253573 7348155 ~ 7356914 (+)
si:ch211-142k18.1 LOC108257612 coding upstream 265572 7339079 ~ 7344915 (+)
nme6 nme6 coding upstream 334341 7263926 ~ 7276146 (+)
six4b LOC108258176,LOC108434989 coding downstream 8241 7623221 ~ 7629922 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 21205 7636185 ~ 7639104 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 109326 7724306 ~ 7767694 (+)
rd3l LOC108257848 coding downstream 159512 7774492 ~ 7776361 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 170442 7785422 ~ 7832026 (+)
G291434 NA non-coding upstream 88364 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 89629 7489308 ~ 7520858 (+)
G291380 NA non-coding upstream 205382 7404428 ~ 7405105 (+)
G291300 NA non-coding upstream 348376 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 383260 7220306 ~ 7227227 (+)
G291581 NA non-coding downstream 50149 7665129 ~ 7666009 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding downstream 51939 7666919 ~ 7667805 (+)
G291644 NA non-coding downstream 218350 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 330972 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 511041 8126021 ~ 8127898 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 590801 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1450447 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1808794 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2631087 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3000886 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 162617 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 428406 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 873667 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1378533 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1459048 9074028 ~ 9179173 (+)

Expression


Co-expression Network