LOC113545370


Basic Information

Item Value
gene id LOC113545370
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5302630 ~ 5306902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404604.2
CTGAATGCTTGAAAGGAGCCAGAAATCAAACGTGAGTCTCCCTTGATCACGAGAACCTTAGCCATTTTATCCTGGAAGGgctgtggtggatccggagcctatcccactGGGGATGAACACGGATTCAACCCAGATGTGATGGCAGTCCTTTGCAGATCACCTTGGGAGGTAGGAAAAAACTGGAGAACATAGAGGAAACCCACGTAGAcaaagggagaacatgtgaGAACTCCACACGGACCCTGGAGAGCTAATGATCCTAACTAAGCTACTTAATGATACTGTCACACTCTGTGCGCCGCTCCATTCGAGCCACAAGCATGACCAAACCCACCATCCCTCAAGGCACAAGTAAAACATGCATGCAAAGAATACTCATCTCTGTACTAGCACTCAGGAGGTGGAAGGAACATCCCTGACTTCCACACACCTGACATCCTGCAGTAACAATACGCGAGTACTCTTGTAGTTAATTTATGCCAAACATAATGTTAATGGTGGCCTGCTTTATGACAGTGTGTTCAAAGTGTTTTCAAAACTGTATCCAAATGCACAAGACATGATGTGCTGTGTCAGCcaacattaaacacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404604.2 True 592 lncRNA 0.46 3 5302630 5306902

Neighbor

gene id symbol gene type direction distance location
oma1 oma1 coding upstream 205153 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 224712 5066310 ~ 5077918 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 238481 5052030 ~ 5064149 (+)
suco suco,LOC107712873,LOC107687343 coding upstream 254188 4998148 ~ 5048442 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding upstream 363119 4932489 ~ 4939511 (+)
dab1a dab1,dab1a,LOC107581465 coding downstream 20263 5327165 ~ 5502404 (+)
LOC113545193 NA coding downstream 198937 5505839 ~ 5520633 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding downstream 236054 5542956 ~ 5575570 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 537131 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 556689 5863591 ~ 5868013 (+)
G290192 NA non-coding upstream 48907 5253517 ~ 5253723 (+)
LOC117599804 NA non-coding upstream 151705 5147185 ~ 5150925 (+)
G290030 NA non-coding upstream 394818 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 406243 4896122 ~ 4896387 (+)
G290009 NA non-coding upstream 487834 4808540 ~ 4814796 (+)
G290417 NA non-coding downstream 237216 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 272916 5579818 ~ 5588495 (+)
G290419 NA non-coding downstream 340475 5647377 ~ 5655687 (+)
G290562 NA non-coding downstream 425829 5732731 ~ 5734300 (+)
G290566 NA non-coding downstream 494896 5801798 ~ 5804340 (+)
dnm3a dnm3,dnm3a other upstream 323230 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 693029 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 964331 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 992701 4248330 ~ 4309929 (+)
G289531 NA other upstream 1232263 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 428571 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 829018 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1705840 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2470695 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2736484 8043386 ~ 8074444 (+)

Expression


Co-expression Network