LOC113546783


Basic Information

Item Value
gene id LOC113546783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3364228 ~ 3368671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404745.2
tttttggaagaaatTTAAAAGACTTGGACAGCAAGGATTACAGAGTAGCGAATTTGGATTTAGTTGTGGCATTAATCCAGATTTATGTATCATCATCATATAACATGATGACTTCCTGAACGTGGTCTTTCTCGTCTGTGTGCTGGAAGAGTGAGGTTAGATGAGTGTCAGACTGAAACACCCAGTTAGAAAAGAGGACAAAACCTCAGCAGGAGCTGAAATGGAAATTATGAGCTGCACTAATGGAGCATGTCTCGTGTTAAAAGTACTCAGACCGGACTCCCAACCACCTGACTGAGGAGATGCTCTGTGCTGAAACCGTAAAGGTTAGATGAGTGTCAGACTGAAACACCCAGTTAGAAAAGAGGACAAAACCTCAGCAGGAGCTGAAAGGGAACGCATGAGCTGAGAAAATAAGATGATGTGCCGTGTCGAGGATCCAGGTACTGCGGTTGTTTCCTGAAGTAAAGACGAGCAGCGTGTCTACATACAGCACAGACACGTTTTTATCCGCCCTTACATCTGAACTTGTTTTGGTGTTGACTGCAATGTCTttacaaatttgtaaaattggttgtcagatcttttctgtgaagtaaataaagaataataatgtggaaaaataa
>XR_003404747.2
tatttttggaagaaatTTAAAAGACTTGGACAGCAAGGATTACAGAGTAGCGAATTTGGATTTAGTTGTGGCATTAATCCAGATTTATGTATCATCATCATATAACATGATGACTTCCTGAACGTGGTCTTTCTCGTCTGTGTGCTGGAAGAGTGAGGAGCTGAAATGGAAATTATGAGCTGCACTAATGGAGCATGTCTCGTGTTAAAAGTACTCAGACCGGACTCCCAACCACCTGACTGAGGAGATGCTCTGTGCTGAAACCGTAAAGGTTAGATGAGTGTCAGACTGAAACACCCAGTTAGAAAAGAGGACAAAACCTCAGCAGGAGCTGAAAGGGAACGCATGAGCTGAGAAAATAAGATGATGTGCCGTGTCGAGGATCCAGGTACTGCGGTTGTTTCCTGAAGTAAAGACGAGCAGCGTGTCTACATACAGCACAGACACGTTTTTATCCGCCCTTACATCTGAACTTGTTTTGGTGTTGACTGCAATGTCTttacaaatttgtaaaattggttgtcagatcttttctgtgaagtaaataaagaataataatgtggaaaaataa

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404745.2 True 626 lncRNA 0.41 8 3364230 3368671
XR_003404747.2 False 571 lncRNA 0.41 7 3364228 3368671

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 49765 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 86260 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 102178 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 219494 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 222511 3135733 ~ 3141717 (+)
rasl11b rasl11b coding downstream 30444 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 186066 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 349435 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 362971 3731642 ~ 3753431 (+)
kita kit coding downstream 412719 3781390 ~ 3808749 (+)
G289134 NA non-coding upstream 20484 3341401 ~ 3343744 (+)
G289121 NA non-coding upstream 75687 3279406 ~ 3288541 (+)
G288927 NA non-coding upstream 170298 3192107 ~ 3193930 (+)
G288839 NA non-coding upstream 384023 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 447418 2869596 ~ 2916810 (+)
G289164 NA non-coding downstream 15006 3383677 ~ 3383882 (+)
G289240 NA non-coding downstream 125280 3493951 ~ 3494334 (+)
G289351 NA non-coding downstream 254393 3623064 ~ 3687916 (+)
G289363 NA non-coding downstream 342030 3710701 ~ 3739214 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 474444 3843115 ~ 3844679 (+)
cnstb LOC108257742 other upstream 868176 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1222047 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1342965 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2004112 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2099596 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 574823 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 619381 3988052 ~ 3988123 (+)
G289531 NA other downstream 685786 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 879659 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 960161 4328832 ~ 4338299 (+)

Expression


Co-expression Network