LOC113546887


Basic Information

Item Value
gene id LOC113546887
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3365278 ~ 3365402 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404755.1
TTGCCCATTTAAGACTGCTCGTGTCCTAAATGATTAACACAGGGGGGAAGAAGAATTCTCTCAAAAAACCTGAAGTAAAGGCTGATTTATTTTCCTTGCTTCGGATCCTGTCGGGAGAAACAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404755.1 True 125 ncRNA 0.42 1 3365278 3365402

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 50815 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 87310 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 103228 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 220544 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 223561 3135733 ~ 3141717 (+)
rasl11b rasl11b coding downstream 33713 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 189335 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 352704 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 366240 3731642 ~ 3753431 (+)
kita kit coding downstream 415988 3781390 ~ 3808749 (+)
G289134 NA non-coding upstream 21534 3341401 ~ 3343744 (+)
G289121 NA non-coding upstream 76737 3279406 ~ 3288541 (+)
G288927 NA non-coding upstream 171348 3192107 ~ 3193930 (+)
G288839 NA non-coding upstream 385073 2978333 ~ 2980205 (+)
G288836 NA non-coding upstream 494612 2870362 ~ 2870666 (+)
LOC113546886 NA non-coding downstream 2246 3367648 ~ 3367772 (+)
G289164 NA non-coding downstream 18275 3383677 ~ 3383882 (+)
G289240 NA non-coding downstream 128549 3493951 ~ 3494334 (+)
G289351 NA non-coding downstream 257662 3623064 ~ 3687916 (+)
G289363 NA non-coding downstream 345299 3710701 ~ 3739214 (+)
cnstb LOC108257742 other upstream 869226 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1223097 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1344015 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2005162 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2100646 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 578092 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 622650 3988052 ~ 3988123 (+)
G289531 NA other downstream 689055 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 882928 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 963430 4328832 ~ 4338299 (+)

Expression


Co-expression Network