LOC117599711


Basic Information

Item Value
gene id LOC117599711
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20645389 ~ 20646391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580093.1
CGCTCctcggtgtgtgtatgtgtgtatgtgtgtgtgcatctctcGCAAGCTCTGCCAGCTACATCACACTCTCTTTCACCGGTTACGGGAGTCTCtaaaagcacaaagagacaaaTAAGTAAACAGCTTTATGGGGACAGAAGGCTGTACGGTTTCAGGGGGATCGGCATCAGGCTCTTTGGGACACATCACCCCTGTGGACCTTCAGAGACCTATAAAAAAGGAAGAACCTGGAGATGAAGTCTACCTCCTTAAGGTGAAGTGATGTCAGGCTCTGTGGTccaacacaaacatttaaaaaaggaagaaccTGAAGATTCTGTCAGACACCAGGTGGAGGAACATCCAACACTATGGAAAACATAGGGAGGATTTCAaagaaaccattttaaaaaggaCGAGCCTGAAGATGAAGACCACCTCCATACAAAGACAGAATGGGGTTAAGTAACACTTAACCATTCATTTCAAATGTTGGAAacctattttattattttttttttaaatctaggaTGTTGTGAGGTGAAAGTCTGCTTGATCCCTTGGCCCTCATGTCTGGCACACAAATGGGTGGATCAGCTGTTTTATTCCAAATTTCAGACAATTTTGGAATTACCACATACAGTTCTTGGCTACAGTCACCATATCCTTCTGATGTTCCTGTAGTGGTTTTCTAGGATGTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580093.1 True 686 lncRNA 0.43 4 20645389 20646391

Neighbor

gene id symbol gene type direction distance location
LOC113524753 NA coding downstream 34120 20593441 ~ 20611269 (-)
LOC117599679 LOC108258211 coding downstream 53603 20584667 ~ 20591786 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding downstream 70135 20566946 ~ 20575254 (-)
LOC113524747 LOC108258215 coding downstream 207915 20425285 ~ 20437474 (-)
trnae-uuc_16 NA coding downstream 221807 20423511 ~ 20423582 (-)
LOC113524743 LOC108258194 coding upstream 95679 20742070 ~ 20750140 (-)
trnae-uuc_17 NA coding upstream 104109 20750500 ~ 20750571 (-)
LOC117595662 LOC108258028 coding upstream 338797 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 349410 20995801 ~ 20999074 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding upstream 447086 21093477 ~ 21112429 (-)
G298823 NA non-coding downstream 144249 20492009 ~ 20501140 (-)
G298801 NA non-coding downstream 215181 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 254672 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 397474 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 398987 20243428 ~ 20246402 (-)
G298878 NA non-coding upstream 29652 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 59086 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 108581 20754972 ~ 20888652 (-)
LOC113525588 NA non-coding upstream 286212 20932603 ~ 20947358 (-)
G298934 NA non-coding upstream 303451 20949842 ~ 20950072 (-)
LOC117599698 NA other downstream 203097 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 266484 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 267013 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 275110 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 279838 20365285 ~ 20365551 (-)
G298875 NA other upstream 9608 20655999 ~ 20664540 (-)
G299022 NA other upstream 426535 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 945883 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1325690 21972081 ~ 22067610 (-)
G299449 NA other upstream 1349723 21996114 ~ 22000833 (-)

Expression


Co-expression Network