LOC117599712


Basic Information

Item Value
gene id LOC117599712
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20183058 ~ 20183574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580094.1
ttggtttgctcGTCTACCCTGGGTTTTCTCCTGTTAGTCGGAGCCCGTAGAGGTCTGTGCCTTGATTGTAAAGGGTGCAGTTGTTGGAGTCCTGCTCCAGGAGtttgttgctgcttgtttgcgCTTATAGTGCGTATATCTCATCTGTGAGTGTTGTAAGCCTGAGGTTGTGTTGCATCGGTTCCTGCTTTCCGgagctcCTCTGCATCGCTGCTTGTGCAGGTGACTTCTGCTGCTGATTTGCTGCTGTGACTTCAAACCATTGGGGCCGTCTGCTGACGGcgagctgctgttttgtttctag

Function

GO:

id name namespace
GO:0098797 plasma membrane protein complex cellular_component
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580094.1 True 304 lncRNA 0.52 3 20183058 20183574

Neighbor

gene id symbol gene type direction distance location
LOC113523908 LOC108261534 coding downstream 33585 20147871 ~ 20149473 (-)
LOC117599697 LOC108261534 coding downstream 75813 20105758 ~ 20107245 (-)
LOC117599719 LOC108261534 coding downstream 251805 19924626 ~ 19931253 (-)
LOC117599680 NA coding downstream 305313 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 317396 19864134 ~ 19865662 (-)
nfkbiaa LOC108258222 coding upstream 93393 20276967 ~ 20279845 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 109838 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 125715 20309289 ~ 20309360 (-)
trnar-acg_12 NA coding upstream 125946 20309520 ~ 20309592 (-)
trnah-gug_15 NA coding upstream 127234 20310808 ~ 20310879 (-)
G298549 NA non-coding downstream 228760 19953944 ~ 19954298 (-)
LOC117599713 NA non-coding downstream 355134 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 615500 19358070 ~ 19567558 (-)
G298444 NA non-coding downstream 640297 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding downstream 769124 19409824 ~ 19413934 (-)
LOC117599709 NA non-coding upstream 6509 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 53354 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 59854 20243428 ~ 20246402 (-)
G298758 NA non-coding upstream 63661 20247235 ~ 20247915 (-)
G298794 NA non-coding upstream 205510 20389084 ~ 20390717 (-)
G298543 LOC108261534 other downstream 242059 19884160 ~ 19940999 (-)
G298475 NA other downstream 591621 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 709082 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 731454 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 772684 19374773 ~ 19410374 (-)
trnah-gug_23 NA other upstream 181711 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 186634 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 194731 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 195260 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 256046 20439620 ~ 20442292 (-)

Expression


Co-expression Network