LOC117599731


Basic Information

Item Value
gene id LOC117599731
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6930369 ~ 6933860 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580107.1
GAGGGCAGGAAAGTTTACAGCTACAGGATGGATAGTGgacatgttccagtatgactGGAATTTTACACTAACTGGCCTAAAATGAAACCCTAGTGCAGATACAAAACAAGAGTTAAAGAGTATGTGAGATTAAAGGAGCAGATCCTTCAGATGGCTGCCTTGCTCTGAGAGCCACGACATGGAGTCCTGCAGTCCACATTCTGTGGTAGCACCTTTAGAATTCGTCTGTAAGCACCAGATGGCACAACTGTACAGGTTGAAACTGAACCTGGCGCAATGAGCCACTACTTGGCAATGCTTCGAAGGAACCCAGTTAAAGAGTGAAACACTGCACTCAGGAAAGCTAACATGC
>XR_004580108.1
TGCGAGGGCAGGAAAGTTTACAGCTACAGGATGGATAGTGgacatgttccagtatgactGGAATTTTACACTAACTGGCCTAAAATGAAACCCTAGTGCAGATACAAAACAAGAGTTAAAGAGTATGTGAGATTAAAGGAGCAGATCCTTCAGATGGCTGCCTTGCTCTGAGAGCCACGACATGGAGTCCTGCAGTCCACATTCTGTGGTAGCACCTTTAGAATTCGTCTATGGCACAACTGTACAGGTTGAAACTGAACCTGGCGCAATGAGCCACTACTTGGCAATGCTTCGAAGGAACCCAGTTAAAGAGTGAAACACTGCACTCAGGAAAGCTAACATGC
>XR_004580109.1
ATGCTTTGCGAGGGCAGGAAAGTTTACAGCTACAGGATGGATAGTGgacatgttccagtatgactGGAATTTTACACTAACTGGCCTAAAATAGTTAAAGAGTATGTGAGATTAAAGGAGCAGATCCTTCAGATGGCTGCCTTGCTCTGAGAGCCACGACATGGAGTCCTGCAGTCCACATTCTGTGGTAGCACCTTTAGAATTCGTCTGTAAGCACCAGATGGCACAACTGTACAGGTTGAAACTGAACCTGGCGCAATGAGCCACTACTTGGCAATGCTTCGAAGGAACCCAGTTAAAGAGTGAAACACTGCACTCAGGAAAGCTAACATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580107.1 True 352 lncRNA 0.46 4 6930378 6933860
XR_004580108.1 False 344 lncRNA 0.46 4 6930375 6933860
XR_004580109.1 False 334 lncRNA 0.46 3 6930369 6933860

Neighbor

gene id symbol gene type direction distance location
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 19181 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 37016 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 62338 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 81836 6833386 ~ 6848533 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 123028 6797339 ~ 6807341 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 53249 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 90147 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 120098 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 162281 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 184831 7118691 ~ 7147134 (+)
G291037 NA non-coding upstream 95671 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 202855 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 507403 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 587829 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 692453 6237714 ~ 6237916 (+)
G291058 LOC103367973 non-coding downstream 5331 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 48103 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 124523 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 286446 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 327190 7261050 ~ 7262111 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 770329 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1128676 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1950969 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2320768 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2592070 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 78882 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 843737 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1109526 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1554787 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2059653 8993513 ~ 8996996 (+)

Expression


Co-expression Network