LOC117599748


Basic Information

Item Value
gene id LOC117599748
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7945952 ~ 7948031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580121.1
aaactataatggAGTATTTGTTACAGTACCAAGTTCAGTTCCTCATTATTATGTTTGATATTTGACGTTGTGACtgctattttcttttctcttccaaatccttttgttttttcttaagCATGTCAGTGTCTAAAGATTCTTTGTTATACATGAGCCATAGCCCGTATTATGTAGGCTGCCTTTTAATGCTGATCTCCCATTTCTCAGTTCTTCATCTGGAAGACATGCAACCACTGACAAATCTGTCAGTGTGTAACGTGAGACCCTCACAGACCCTCAGGTGCGCAcgtgcgtgagtgtgtgcgtgtgagagggCAGCAGATGGCGAGCACTCATTTCTGCTTGTGATATCACCGTCAGCTCGCATCATTCTTCCATACATCATTCCCATTCTATTATCAGGGTGTACACCTGagactgatgagaaaaagaGCTCATCTCATGAAAATACACCTGTATGCAGCATTATGATGGTGTAAACCTTTTTACGTGGCAGATTTCCTCACAGTGCAGGTGCTTATGGAGTAGATGCAGTCAATCCGCCTGCCTCCAACCATGAGGCTGCTGGGTTCTTCAAAGACTGGATTAAACAGCACAGCATGGTCTGCTCCATTTCCCCTCCATCTGACTGACTCAAGACCAGGCTCTGGTTTCTACCCATAATTCCCATGCAACACTCTAAGCAAGGTCATCTCAGTGACTTCACCAACTTTTAGTCATCTGGCTTGGATCAGGGGATTCCTACTAATTAATAGGCCTAATTGATTTACTTGGTTGTGTCATTTCAGTGTCAGAATGTAGTTGAGTATATGACCCAGTTTGCTTTTTAGATAtacataatgtatattttttcacaAGGAAAATCTTATCTtttgttttggaaatgtttatCATGACAAAAGGCCATTTTGATTATACCAATAGCATcagcgatgatgatgatgatgatgatgatgatgatgatggagcaAATCTCCCCACAGATTGTGCCTCATaagttttttttagtaaagttgtgtctAAATGTttgccaaactgaactaaacatttccactagatttaaaaaaatttgagaAATGCTGATTTAGGTCGTACTcttgcatgtgtatgttgatTACCCGTAATGTGCAAAGGATGTTCTTGAGACAGCTTGTTTGCATTTAATGATACccacaaaacataaaagcaCACAGAGGGCTGGAAACATGAAATAACCACTAATTggtgaaagaaaaggcagaaagtAGAAATGCCAGTTACTGCTATGCCAAAAATTATTTAGCAGTGTGACAGCATCTGAAAAGGTCAACCTCTAGAGACAAATTAGTGAAAAGTTGACTTAGGTGTGAATTAAgcgaggtgaaaagaaaatggtttgacatgaaaacagagaaaaaaaaagatctacactgtaccctggtgatcatggacaccaagaatgtcacacagagaaactgctatttttaaatgtgttttggcCAATGTGCTAGATCTGAAGTGTTGCATAGCATTCAAAGAATTCAAATGGAACTGATTTATAGCTTTCATCCTCTTAAAAAAGTCACttaaaaaagcatttgtttATGGCTTATGGCTATGCGCAGACAGACCAGCCCATCCTCTGTTTATGATTGGTTTTATGTTgactctttttctttattttccattttctttaattaatgctaataatataaaatgcctGGGTGTCACAACATTTTCTCAAAgctattcttagtccctgacatAGTGAATtagcatgaggatgtttttttgaTAAAGACTATGAAGCACTTCTTTAAGTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580121.1 True 1805 lncRNA 0.38 3 7945952 7948031

Neighbor

gene id symbol gene type direction distance location
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding upstream 140 7885793 ~ 7945812 (+)
trnaa-cgc_7 NA coding upstream 57116 7888765 ~ 7888836 (+)
trnaa-ugc_18 NA coding upstream 57872 7888009 ~ 7888080 (+)
trnaa-ugc_17 NA coding upstream 58353 7887528 ~ 7887599 (+)
trnaa-cgc_6 NA coding upstream 61236 7884645 ~ 7884716 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding downstream 140656 8088687 ~ 8125663 (+)
esr2a LOC108258142,LOC108412120 coding downstream 225131 8173162 ~ 8190581 (+)
LOC113545195 l3hypdh,LOC107684001 coding downstream 348583 8296614 ~ 8305599 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding downstream 498285 8446316 ~ 8459728 (+)
LOC113545337 LOC108257647 coding downstream 601911 8549942 ~ 8557745 (+)
G291644 NA non-coding upstream 108872 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 278147 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 279943 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 330972 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 423829 7521924 ~ 7522123 (+)
G291769 NA non-coding downstream 177990 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 361211 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 516806 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 522916 8470947 ~ 8473728 (+)
G291996 NA non-coding downstream 562538 8510569 ~ 8510776 (+)
atp5mpl NA other upstream 163944 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 926266 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1785912 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2144259 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2966552 4941951 ~ 4979400 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 95355 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 540616 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1045482 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1125997 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1955719 9903750 ~ 9950731 (+)

Expression


Co-expression Network