LOC117599771


Basic Information

Item Value
gene id LOC117599771
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 69710 ~ 71901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580137.1
GACGGTAAAGAAGCTGCTGTTTCTTCACCTAAACGAATGAATTATCAGCCTGGACTAGTCATTTTCACACTAAAACATTCCTTACAGAGttttacagattacagattcGGTAgagttataaataaaaagtctgTCTTGTGTCAGTATTTGAGGTTTTAAAACTCTCGTCCTGCTGTAAGACCTGAGCAGAAGCTGAGCATCTACAACCATAGAGACGACCTCAACAACACGCCTGATGTTATCTCCATTAAAGAGGAAGAAGCTGACAAAGACTACCTCTACTGTGAGGTTTGTAAATCCTTTTTCTTCAACAAGTGTGAGGTTCATGATCCGGCACTCTTCATCCCTGATACTCTTGTTCCCATGGGAGTCCCTGACTGAGCCAGACTGAGAACCAGTAGACAGAGAGGAAGCCATTAACAGTGGATACTCCTGGGTGGTGAGTTTTTCTAAATTTGTCATAAACAAATGGCATAAGTACAAGAATAGTTTATTTCTATCCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580137.1 True 506 lncRNA 0.41 3 69710 71901

Neighbor

gene id symbol gene type direction distance location
LOC117599786 LOC107725728 coding downstream 13302 85203 ~ 101979 (+)
LOC113523954 LOC107573535,LOC107574960,LOC107710299,LOC107571679 coding downstream 48275 120176 ~ 134264 (+)
LOC117599788 LOC107739129,LOC107589765 coding downstream 131119 203020 ~ 210184 (+)
LOC117599754 NA coding downstream 333251 405152 ~ 405946 (+)
LOC117599791 LOC108280478,LOC108412378 coding downstream 439155 511056 ~ 517444 (+)
LOC117599770 NA non-coding downstream 82228 154129 ~ 154563 (+)
LOC117599768 NA non-coding downstream 83106 155007 ~ 155595 (+)
LOC117599767 NA non-coding downstream 316794 388695 ~ 391202 (+)
LOC113525268 NA non-coding downstream 382697 454598 ~ 468404 (+)
G287627 NA non-coding downstream 690530 762431 ~ 802524 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other downstream 734405 806306 ~ 897362 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other downstream 735292 807193 ~ 898410 (+)
G287628 h3f3b,LOC105888650,LOC101068541,LOC105896821,LOC105893409 other downstream 740376 812277 ~ 892008 (+)
G287892 NA other downstream 1171156 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 1187275 1259176 ~ 1264632 (+)

Expression


Co-expression Network