LOC117599781


Basic Information

Item Value
gene id LOC117599781
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2147215 ~ 2151238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580150.1
AGGAAACAAGCACAGTGAGGGTATGACATAGCATCACGTTTCAAATTAACTTCAAAATGCAGATCATAAGGGGCAAGACAATAAAAGGCGTGAGCATGCTTCTCTGTGGCTTACTGCTAATCTACTGCCAGATCACACATGTGGGGGCTGAAGACATATATGTGGCAGAAGTGATGATCGAAGGTAATGCAACCATGGACGTATCTGGTTTCGTGTCTGAAATGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580150.1 True 227 lncRNA 0.43 4 2147215 2151238

Neighbor

gene id symbol gene type direction distance location
LOC117599673 NA coding upstream 15944 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 27298 2092475 ~ 2119917 (+)
si:dkey-1j5.4 LOC108257701 coding upstream 231355 1912614 ~ 1915860 (+)
lbr lbr coding upstream 245222 1892769 ~ 1901993 (+)
enah enah coding upstream 258022 1824985 ~ 1889193 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 11193 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 38521 2189759 ~ 2212201 (+)
fzd3a fzd3 coding downstream 184832 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 285460 2436698 ~ 2439040 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 303555 2454793 ~ 2474603 (+)
G288225 NA non-coding upstream 73334 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 75939 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 151536 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 212432 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 449048 1695908 ~ 1698167 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 64339 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 174420 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 297184 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 355331 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 430071 2581309 ~ 2608373 (+)
LOC113546780 NA other upstream 5034 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 125952 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 787099 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 882583 1259176 ~ 1264632 (+)
G287892 NA other upstream 903543 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 333798 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1792256 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1836814 3988052 ~ 3988123 (+)
G289531 NA other downstream 1903219 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 2097092 4248330 ~ 4309929 (+)

Expression


Co-expression Network