LOC117599801


Basic Information

Item Value
gene id LOC117599801
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5815902 ~ 5819066 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580161.1
CCTTCAGATCGAACGATCTCTTCTGACGTCAGGACTTTTCAGAACCGGAGTCAGGTTTCAGTGTGATTTTGGAAGCTGAAATGCTCCATCAGCTTTCCATCTGATCTAGGTGCTCCTAATAACTGCTGTGTGGAGCAACAGTCACCTGCCCAAGAATATACAGAGGACAGCAGTGCTTTGTTCAGGAACTGATGTTGATGAACAGCTAGTGGACAATTCAAACACACTGGACATGGAAAACTTTTTCACTGTCCACATACAAGTTTTGGTTTTCTATTACTTCCCTGATTATTCATGAGACCCATTAGCAAGGCCCCGCCACTCATCcccagtaggtggcagtaaaATGTTTGGAGAAAACCCAACAAAGCCAACCACCAAAAGAACCATATCCCagcagtcaagcatggtggtgggaatGTGAAGATCTGGGTCTGCTTTTCCTCCTCTGGACCAGGACAATTCATCATTAAAGGAACCATGAGGTGTGCCAGCAGATTCTTGAACAGAACATCATCATGCCATCTGTTAAGAAGCTAAAACTGGGCCAAATGTGGGTtttccaacatgacaacgacccaaaacattCAAGCTACTCTATGAAAGAATGTTTCAGGAGAAAGAAGATTTGTGTTTTCAgttggccaagtcaaagtcttGAACTGAATCtaattgagatgctgtggcaggaccTGAAGCAGACATCCCTAAACCTCACCGCTGGCtgagttctgtcagga
>XR_004580162.1
ATCGAACGATCTCTTCTGACGTCAGGACTTTTCAGAACCGGAGTCAGGTTTCAGTGTGATTTTGGAAGCTGAAATGCTCCATCAGCTTTCCATCTGATCTAGGTACACCTACCACTGACACTCTGCATCACCTGTGTTCACCTGTCATCTGATATTTGTGACATAGGTGCTCCTAATAACTGCTGTGTGGAGCAACAGTCACCTGCCCAAGAATATACAGAGGACAGCAGTGCTTTGTTCAGGAACTGATGTTGATGAACAGCTAGTGGACAATTCAAACACACTGGACATGGAAAACTTTTTCACTGTCCACATACAAGTTTTGGTTTTCTATTACTTCCCTGATTATTCATGAGACCCATTAGCAAGGCCCCGCCACTCATCcccagtaggtggcagtaaaATGTTTGGAGAAAACCCAACAAAGCCAACCACCAAAAGAACCATATCCCagcagtcaagcatggtggtgggaatGTGAAGATCTGGGTCTGCTTTTCCTCCTCTGGACCAGGACAATTCATCATTAAAGGAACCATGAGGTGTGCCAGCAGATTCTTGAACAGAACATCATCATGCCATCTGTTAAGAAGCTAAAACTGGGCCAAATGTGGGTtttccaacatgacaacgacccaaaacattCAAGCTACTCTATGAAAGAATGTTTCAGGAGAAAGAAGATTTGTGTTTTCAgttggccaagtcaaagtcttGAACTGAATCtaattgagatgctgtggcaggaccTGAAGCAGACATCCCTAAACCTCACCGCTGGCtgagttctgtcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580161.1 False 740 lncRNA 0.45 3 5815902 5819066
XR_004580162.1 True 797 lncRNA 0.45 3 5815909 5819066

Neighbor

gene id symbol gene type direction distance location
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 240332 5542956 ~ 5575570 (+)
LOC113545193 NA coding upstream 295269 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 313498 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 718425 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 737984 5066310 ~ 5077918 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 24967 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 44525 5863591 ~ 5868013 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 56122 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 85628 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 139365 5958431 ~ 5961185 (+)
G290569 NA non-coding upstream 7986 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 10314 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 11562 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 81602 5732731 ~ 5734300 (+)
G290419 NA non-coding upstream 160215 5647377 ~ 5655687 (+)
G290699 NA non-coding downstream 418648 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 523197 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 603606 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 894861 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 1015341 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 14209 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 836502 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1206301 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1477603 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1505973 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 316854 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1193676 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1958531 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2224320 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2669581 8488647 ~ 8534500 (+)

Expression


Co-expression Network