trnaa-ugc_17


Basic Information

Item Value
gene id trnaa-ugc_17
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7887528 ~ 7887599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaa-ugc_17
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGTCCAGGGTTCAATCCCCTGCATCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc_17 True 72 tRNA 0.54 1 7887528 7887599

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc_6 NA coding upstream 2812 7884645 ~ 7884716 (+)
trnaa-cgc_5 NA coding upstream 4239 7883218 ~ 7883289 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding upstream 55502 7785422 ~ 7832026 (+)
rd3l LOC108257848 coding upstream 111167 7774492 ~ 7776361 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding upstream 119834 7724306 ~ 7767694 (+)
trnaa-ugc_18 NA coding downstream 410 7888009 ~ 7888080 (+)
trnaa-cgc_7 NA coding downstream 1166 7888765 ~ 7888836 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding downstream 201088 8088687 ~ 8125663 (+)
esr2a LOC108258142,LOC108412120 coding downstream 285563 8173162 ~ 8190581 (+)
LOC113545195 l3hypdh,LOC107684001 coding downstream 409015 8296614 ~ 8305599 (+)
G291644 NA non-coding upstream 50448 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 219723 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 221519 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 272548 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 365405 7521924 ~ 7522123 (+)
LOC117599748 NA non-coding downstream 58353 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 238422 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 421643 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 577238 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 583348 8470947 ~ 8473728 (+)
atp5mpl NA other upstream 105520 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 867842 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1727488 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2085835 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2908128 4941951 ~ 4979400 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 155787 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 601048 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1105914 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1186429 9074028 ~ 9179173 (+)
G293016 ileu other downstream 2016151 9903750 ~ 9950731 (+)

Expression


Co-expression Network