trnad-guc_16


Basic Information

Item Value
gene id trnad-guc_16
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4327471 ~ 4327542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnad-guc_16
TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnad-guc_16 True 72 tRNA 0.60 1 4327471 4327542

Neighbor

gene id symbol gene type direction distance location
nmu NA coding upstream 88550 4235827 ~ 4238921 (+)
cep135 cep135 coding upstream 131031 4176531 ~ 4196440 (+)
aasdh aasdh coding upstream 189910 4124058 ~ 4137561 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding upstream 212016 4101669 ~ 4115455 (+)
hook1 hook1 coding upstream 282198 4024682 ~ 4045273 (+)
trnad-guc_18 NA coding downstream 6016 4333558 ~ 4333629 (+)
trnad-guc_19 NA coding downstream 10361 4337903 ~ 4337974 (+)
trnad-guc_22 NA coding downstream 22266 4349808 ~ 4349879 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding downstream 39223 4366765 ~ 4396120 (+)
LOC113545214 LOC108257527 coding downstream 80226 4407768 ~ 4419833 (+)
LOC117599777 NA non-coding upstream 83520 4239026 ~ 4243951 (+)
G289530 LOC108257764 non-coding upstream 253505 4061818 ~ 4073966 (+)
G289532 NA non-coding upstream 261046 4060744 ~ 4066425 (+)
G289533 NA non-coding upstream 271486 4047209 ~ 4055985 (+)
G289515 NA non-coding upstream 353456 3942274 ~ 3974015 (+)
G289521 NA non-coding downstream 18037 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding downstream 23206 4350748 ~ 4352801 (+)
G289831 NA non-coding downstream 105693 4433235 ~ 4434790 (+)
G289866 angptl1,angptl1a non-coding downstream 202386 4529928 ~ 4539840 (+)
LOC117599674 NA non-coding downstream 296600 4624142 ~ 4627837 (+)
clocka clock,LOC107701480 other upstream 17542 4248330 ~ 4309929 (+)
G289531 NA other upstream 257104 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 339348 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 344777 3943494 ~ 3982694 (+)
cnstb LOC108257742 other upstream 1831419 2485036 ~ 2496052 (+)
trnad-guc_17 NA other downstream 1290 4328832 ~ 4338299 (+)
LOC113545190 NA other downstream 273513 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 614409 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1407931 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1808378 6135920 ~ 6160040 (+)

Expression


Co-expression Network