trnah-gug_24


Basic Information

Item Value
gene id trnah-gug_24
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20370208 ~ 20370279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnah-gug_24
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTGTGGCCGCAGCAACCCCGGTTCGAATCCGGGTCACGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnah-gug_24 True 72 tRNA 0.60 1 20370208 20370279

Neighbor

gene id symbol gene type direction distance location
trnar-acg_18 NA coding downstream 5450 20364686 ~ 20364758 (-)
trnae-uuc_12 NA coding downstream 5682 20364455 ~ 20364526 (-)
trnah-gug_22 NA coding downstream 11881 20358256 ~ 20358327 (-)
trnar-acg_17 NA coding downstream 15310 20354826 ~ 20354898 (-)
trnae-uuc_11 NA coding downstream 15540 20354597 ~ 20354668 (-)
LOC113524770 calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953 coding upstream 22361 20392640 ~ 20403559 (-)
trnae-uuc_14 NA coding upstream 49011 20419290 ~ 20419361 (-)
trnae-uuc_15 NA coding upstream 51576 20421855 ~ 20421926 (-)
trnae-uuc_16 NA coding upstream 53232 20423511 ~ 20423582 (-)
LOC113524747 LOC108258215 coding upstream 55006 20425285 ~ 20437474 (-)
G298758 NA non-coding downstream 122293 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 123806 20243428 ~ 20246402 (-)
G298752 NA non-coding downstream 132974 20236928 ~ 20237234 (-)
LOC117599709 NA non-coding downstream 179564 20190083 ~ 20190644 (-)
LOC117599712 NA non-coding downstream 186634 20183058 ~ 20183574 (-)
G298794 NA non-coding upstream 18805 20389084 ~ 20390717 (-)
G298801 NA non-coding upstream 59235 20429514 ~ 20430208 (-)
G298823 NA non-coding upstream 121730 20492009 ~ 20501140 (-)
LOC117599711 NA non-coding upstream 275110 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 305764 20676043 ~ 20677510 (-)
trnah-gug_23 NA other downstream 4657 20365285 ~ 20365551 (-)
G298543 LOC108261534 other downstream 429209 19884160 ~ 19940999 (-)
G298475 NA other downstream 778771 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 896232 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 918604 19429191 ~ 19451604 (-)
trnae-uuc_13 NA other upstream 8026 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 8555 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 69341 20439620 ~ 20442292 (-)
G298875 NA other upstream 285720 20655999 ~ 20664540 (-)
G299022 NA other upstream 702647 21072926 ~ 21073676 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnah-gug-110 NA coding NC_048585.1 CM023239.2 62746600 ~ 62746671 (-)
eurasian perch (Perca fluviatilis) trnah-gug_18 NA coding NC_053130.1 CM020927.1 3160414 ~ 3160485 (-)
striped catfish (Pangasianodon hypophthalmus) trnah-gug_19 NA coding NC_047613.1 CM018559.1 20337044 ~ 20337115 (-)
tiger barb (Puntius tetrazona) trnah-gug_32 NA coding NC_056721.1 CM032090.1 11518010 ~ 11518081 (-)
tiger barb (Puntius tetrazona) trnaa-ugc_15 NA coding NC_056704.1 CM032073.1 13428616 ~ 13428687 (-)
mexican tetra (Astyanax mexicanus) trnah-gug_19 NA misc NW_019171934.1 APWO02001532.1 42360 ~ 42431 (+)