trnai-aau_1


Basic Information

Item Value
gene id trnai-aau_1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11143887 ~ 11143960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnai-aau_1
GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnai-aau_1 True 74 tRNA 0.61 1 11143887 11143960

Neighbor

gene id symbol gene type direction distance location
ccr6a ccr6 coding upstream 1573 11138827 ~ 11142314 (+)
cep43 fgfr1op coding upstream 5216 11120166 ~ 11138671 (+)
myt1la LOC108257609,LOC108411077 coding upstream 27207 11067464 ~ 11116680 (+)
rnaseh1 rnaseh1,LOC107693208 coding upstream 109000 11028563 ~ 11034887 (+)
kidins220b LOC108258057,LOC108410983,LOC103040274 coding upstream 401556 10722394 ~ 10742331 (+)
trnai-aau_2 NA coding downstream 979 11144939 ~ 11145012 (+)
trnai-aau_3 NA coding downstream 2031 11145991 ~ 11146064 (+)
trnai-aau_4 NA coding downstream 3074 11147034 ~ 11147107 (+)
trnai-aau_5 NA coding downstream 4141 11148101 ~ 11148175 (+)
trnai-aau_6 NA coding downstream 5199 11149159 ~ 11149230 (+)
G293546 NA non-coding upstream 6884 11062896 ~ 11137003 (+)
G293445 LOC108257787,LOC108410973 non-coding upstream 466752 10675680 ~ 10677135 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding upstream 499735 10643500 ~ 10644152 (+)
G293411 NA non-coding upstream 534041 10609626 ~ 10609846 (+)
G293380 NA non-coding upstream 582871 10560797 ~ 10561016 (+)
G293758 NA non-coding downstream 230844 11374804 ~ 11375264 (+)
G293817 NA non-coding downstream 339422 11483382 ~ 11483590 (+)
G293820 NA non-coding downstream 395566 11539526 ~ 11539953 (+)
G293864 LOC108257814 non-coding downstream 528523 11672483 ~ 11675661 (+)
G293873 NA non-coding downstream 546692 11690652 ~ 11692331 (+)
G293528 NA other upstream 118914 11018406 ~ 11024973 (+)
LOC117599733 NA other upstream 461223 10681310 ~ 10682664 (+)
LOC117599798 NA other upstream 973148 10158955 ~ 10170739 (+)
G293016 ileu other upstream 1193156 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1964714 9074028 ~ 9179173 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 417462 11561422 ~ 11579249 (+)
rps29 NA other downstream 580021 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2128122 13272082 ~ 13274243 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other downstream 2324767 13468727 ~ 13551228 (+)
trnaf-gaa_29 NA other downstream 2410915 13554875 ~ 13554947 (+)

Expression


Co-expression Network