trnai-aau_5


Basic Information

Item Value
gene id trnai-aau_5
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11148101 ~ 11148175 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnai-aau_5
GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTCACGGGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnai-aau_5 True 75 tRNA 0.61 1 11148101 11148175

Neighbor

gene id symbol gene type direction distance location
trnai-aau_4 NA coding upstream 994 11147034 ~ 11147107 (+)
trnai-aau_3 NA coding upstream 2037 11145991 ~ 11146064 (+)
trnai-aau_2 NA coding upstream 3089 11144939 ~ 11145012 (+)
trnai-aau_1 NA coding upstream 4141 11143887 ~ 11143960 (+)
ccr6a ccr6 coding upstream 5787 11138827 ~ 11142314 (+)
trnai-aau_6 NA coding downstream 984 11149159 ~ 11149230 (+)
trnai-aau_7 NA coding downstream 2029 11150204 ~ 11150277 (+)
trnai-aau_8 NA coding downstream 3094 11151269 ~ 11151345 (+)
trnai-aau_9 NA coding downstream 4146 11152321 ~ 11152394 (+)
trnai-aau_10 NA coding downstream 5210 11153385 ~ 11153459 (+)
G293546 NA non-coding upstream 11098 11062896 ~ 11137003 (+)
G293445 LOC108257787,LOC108410973 non-coding upstream 470966 10675680 ~ 10677135 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding upstream 503949 10643500 ~ 10644152 (+)
G293411 NA non-coding upstream 538255 10609626 ~ 10609846 (+)
G293380 NA non-coding upstream 587085 10560797 ~ 10561016 (+)
G293758 NA non-coding downstream 226629 11374804 ~ 11375264 (+)
G293817 NA non-coding downstream 335207 11483382 ~ 11483590 (+)
G293820 NA non-coding downstream 391351 11539526 ~ 11539953 (+)
G293864 LOC108257814 non-coding downstream 524308 11672483 ~ 11675661 (+)
G293873 NA non-coding downstream 542477 11690652 ~ 11692331 (+)
G293528 NA other upstream 123128 11018406 ~ 11024973 (+)
LOC117599733 NA other upstream 465437 10681310 ~ 10682664 (+)
LOC117599798 NA other upstream 977362 10158955 ~ 10170739 (+)
G293016 ileu other upstream 1197370 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1968928 9074028 ~ 9179173 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 413247 11561422 ~ 11579249 (+)
rps29 NA other downstream 575806 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2123907 13272082 ~ 13274243 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other downstream 2320552 13468727 ~ 13551228 (+)
trnaf-gaa_29 NA other downstream 2406700 13554875 ~ 13554947 (+)

Expression


Co-expression Network