XLOC_005274 (ifit12)


Basic Information

Item Value
gene id XLOC_005274
gene name ifit12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16989120 ~ 16990896 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010134
ACTTTGTGCTTTTGTTTTTCACAAAAGAAAAAGGATGTCAGAGATGAGTTTAATTCAGGCcagtttaaaaaagaaactgGATCAGCTGGAGTGCCACTTCACATGGGACATTACAAAAGATCATCTAGACTTTACGAACCTCCTCAACAGACTTGAGGAACAAAACAAATTGGATTTAGGGAATGAGGAAGGAGCTGCACGAGCGCAGTGCTCAATGGGATATCTAAAATTCCTTCTCAACTGCAAAGAAGAAGCTCTTACTCACCTGTCGAGATCTGAGGCACTCATCAAAGAAAACTTTGCAGACAACAACGACAAGGCTCTTATTGTGACCTATGGAAATTTTGCCTGGATAAACTACCACATGGAGAACTACACAGAGTGCGAAAGTTACCTGGTTAAGCTTCAGAAGATACATGAAAGATTTGCAACTGAGTCTTCAGCTGTTCCAGAGGTGCTTGGGGAGAAAGGGTGGACTTATCTTAAATTCTCTCGTAAATATTATGACAAGGCAGTAGAAGTTTTTCAGAAAGCTGTGGAACTGGATCCAACAAATAGTGAGTGGAACGCAGGTTATGCCATCGCTCTGTATCGCACTGAGAATTTTAACCCACCACCTTGTACTGTGGAAACACCTGCAATAAAACAGCTGAGACAGGCCATTGACTTAAACCCAGATGATGATGTTCTGAGAGTTATTCTAGGAATTAAACTTTTGAATTGCTCCAAAGGTTTAATGAACGAGTCCGAGCAATTGGTTGAGAAAGCTTTGAATCAGTCTCCAGAACATCCACATGTCATTAGATATGTTGGAATGTTCCTCAGGGATCAGGGATCTGTTGACAGGTCCATTGAAATTCTGAAGAAAGCCCTTCAAAGATCACCAAAATCAGGCTTCATATGTCATCAATTAGCAATGTGCTACAAGACCAAGAAAATAAACCTATGTAAAGAAAAACGGAGAAAAGTGGAGGTAGATGAGGCTCGCGATCAAAGCATATACTACTTAGAAGAGGCAACTTCCTTAATACCATCCTTTATCTCTGCAGTGTGTCAGCTCGGACTTCAGTATGGAGACCGACGTGATCTGCTTAAAGCAGAAGAGCAGTTTGACAAAGCATTTAAGTTAGTGAAAGAGAAAAACGAGCATCTTCAATCTGTTCATTTGTCTTATGCTCAGTTCCAGCAGTACAGCAACAGACGTGAGGATTTAGCAATCGAGCACTATGAGAAGTGTTTGACAATGAATCCACACACTCCTGATGGAAATAGAAGTGCACAGAAACTGTGCAACATTGCCAAGAAAAATCTCAAGTTAAATCCAAATGATTGGAAAGCCAATGAAATACTGGGCTTAGTTTATAACTTGAAAGGTGAAATGTTTGAAAGGTATGGGAACACTCCAGACAACGAAGATGATTCATTCCTCTGTAATCTTCT

Function

symbol description
ifit12 Predicted to be involved in defense response to virus. Predicted to be active in cytosol. Is expressed in several structures, including caudal fin; gill; liver; muscle; and pleuroperitoneal region. Orthologous to human IFIT5 (interferon induced protein with tetratricopeptide repeats 5).

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120406-2 Predicted to be involved in defense response to virus. Predicted to be active in cytosol. Is expressed in several structures, including caudal fin; gill; liver; muscle; and pleuroperitoneal region. Orthologous to human IFIT5 (interferon induced protein with tetratricopeptide repeats 5).

Ensembl:

ensembl_id ENSDARG00000090977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010134 True 1440 mRNA 0.40 2 16989120 16990896

Neighbor

gene id symbol gene type direction distance location
XLOC_005273 NA coding downstream 22312 16964656 ~ 16966808 (-)
XLOC_005271 zgc:174855 coding downstream 37474 16938807 ~ 16951646 (-)
XLOC_005272 NA coding downstream 45872 16942204 ~ 16943248 (-)
XLOC_005270 si:dkey-26g8.5 coding downstream 65958 16919411 ~ 16923162 (-)
XLOC_005269 BX000534.2 coding downstream 87361 16901645 ~ 16901759 (-)
XLOC_005275 BX000534.1 coding upstream 6310 16997206 ~ 16998442 (-)
XLOC_005276 ifit11 coding upstream 29009 17019905 ~ 17024079 (-)
XLOC_005277 ifit10 coding upstream 34830 17025726 ~ 17028255 (-)
XLOC_005278 ifit9 coding upstream 42598 17033494 ~ 17035339 (-)
XLOC_005279 stambpl1 coding upstream 126509 17117405 ~ 17152139 (-)
XLOC_005265 BX322603.1 non-coding downstream 242573 16743052 ~ 16746547 (-)
XLOC_005263 BX465840.2 non-coding downstream 334325 16654681 ~ 16654795 (-)
XLOC_005289 dre-mir-2192 non-coding upstream 715896 17706792 ~ 17706901 (-)
XLOC_005291 NA non-coding upstream 730905 17721801 ~ 17727540 (-)
XLOC_005295 NA non-coding upstream 1233638 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 1462311 18453207 ~ 18454407 (-)

Expression


Co-expression Network