trnak-uuu_18


Basic Information

Item Value
gene id trnak-uuu_18
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8891668 ~ 8891740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnak-uuu_18
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-uuu_18 True 73 tRNA 0.56 1 8891668 8891740

Neighbor

gene id symbol gene type direction distance location
atad2b atad2b,LOC107603081 coding upstream 186683 8636450 ~ 8704985 (+)
wdcp wdcp coding upstream 285685 8600411 ~ 8605983 (+)
LOC113545337 LOC108257647 coding upstream 333923 8549942 ~ 8557745 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 431940 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 586069 8296614 ~ 8305599 (+)
gzf1 gzf1 coding downstream 48652 8940392 ~ 8947001 (+)
chgb LOC108258019 coding downstream 95492 8987232 ~ 8990529 (+)
bmp2b LOC108258023 coding downstream 145371 9037111 ~ 9041907 (+)
LOC113545235 plcb4,LOC108258041 coding downstream 291692 9183432 ~ 9255249 (+)
lamp5 lamp5,LOC107704368 coding downstream 366654 9258394 ~ 9264851 (+)
G292102 NA non-coding upstream 186424 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 305766 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 308191 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 380892 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 417940 8470947 ~ 8473728 (+)
G292654 NA non-coding downstream 516752 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 522811 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 662697 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 695960 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 720248 9611988 ~ 9612612 (+)
LOC113545369 NA other upstream 357168 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 817224 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1109660 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1871982 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2731628 6135920 ~ 6160040 (+)
G292216 trmt6 other downstream 101773 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 182288 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1012010 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1267215 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1789570 10681310 ~ 10682664 (+)

Expression


Co-expression Network