trnas-gcu_19


Basic Information

Item Value
gene id trnas-gcu_19
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14397145 ~ 14397226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_19
GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTTTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_19 True 82 tRNA 0.57 1 14397145 14397226

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_9 NA coding upstream 16571 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 18286 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 19041 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 20737 14367708 ~ 14376408 (+)
galca LOC108258153 coding upstream 29866 14357280 ~ 14367279 (+)
papola papola coding downstream 6391 14403617 ~ 14423172 (+)
reps1 reps1,LOC107727647 coding downstream 199965 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 248407 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 300055 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 440718 14837944 ~ 14841301 (+)
G295597 NA non-coding upstream 137155 14259536 ~ 14259990 (+)
G295590 NA non-coding upstream 159436 14237487 ~ 14237709 (+)
G295333 NA non-coding upstream 380519 14016393 ~ 14016626 (+)
G295315 NA non-coding upstream 502348 13894449 ~ 13894797 (+)
G295269 NA non-coding upstream 669287 13727579 ~ 13727858 (+)
trnas-gcu_20 NA non-coding downstream 625 14397851 ~ 14397932 (+)
trnas-gcu_21 NA non-coding downstream 2072 14399298 ~ 14399379 (+)
trnas-gcu_22 NA non-coding downstream 4168 14401394 ~ 14401475 (+)
G295766 NA non-coding downstream 159503 14556729 ~ 14574795 (+)
G295787 NA non-coding downstream 229876 14627102 ~ 14631160 (+)
trnas-gcu_16 NA other upstream 9588 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 11640 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 12758 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 14393 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 92454 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 726541 15123767 ~ 15189612 (+)
G296138 NA other downstream 826420 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1769172 16166398 ~ 16180232 (+)
G296562 NA other downstream 1917037 16314263 ~ 16315126 (+)
G296825 NA other downstream 2199924 16597150 ~ 16597787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnas-gcu_50 NA coding NC_053133.1 CM020930.1 4868089 ~ 4868170 (-)
tiger barb (Puntius tetrazona) trnar-ccu_35 NA misc NC_056707.1 CM032076.1 5433755 ~ 5433827 (+)