trnas-gcu_21


Basic Information

Item Value
gene id trnas-gcu_21
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14399298 ~ 14399379 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_21
GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_21 True 82 tRNA 0.59 1 14399298 14399379

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_9 NA coding upstream 18724 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 20439 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 21194 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 22890 14367708 ~ 14376408 (+)
galca LOC108258153 coding upstream 32019 14357280 ~ 14367279 (+)
papola papola coding downstream 4238 14403617 ~ 14423172 (+)
reps1 reps1,LOC107727647 coding downstream 197812 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 246254 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 297902 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 438565 14837944 ~ 14841301 (+)
trnas-gcu_20 NA non-coding upstream 1366 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 2072 14397145 ~ 14397226 (+)
G295597 NA non-coding upstream 139308 14259536 ~ 14259990 (+)
G295590 NA non-coding upstream 161589 14237487 ~ 14237709 (+)
G295333 NA non-coding upstream 382672 14016393 ~ 14016626 (+)
trnas-gcu_22 NA non-coding downstream 2015 14401394 ~ 14401475 (+)
G295766 NA non-coding downstream 157350 14556729 ~ 14574795 (+)
G295787 NA non-coding downstream 227723 14627102 ~ 14631160 (+)
G295818 NA non-coding downstream 264714 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 266153 14665532 ~ 14665767 (+)
trnas-gcu_16 NA other upstream 11741 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 13793 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 14911 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 16546 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 94607 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 724388 15123767 ~ 15189612 (+)
G296138 NA other downstream 824267 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1767019 16166398 ~ 16180232 (+)
G296562 NA other downstream 1914884 16314263 ~ 16315126 (+)
G296825 NA other downstream 2197771 16597150 ~ 16597787 (+)

Expression


Co-expression Network