trnas-gcu_22


Basic Information

Item Value
gene id trnas-gcu_22
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14401394 ~ 14401475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_22
GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_22 True 82 tRNA 0.59 1 14401394 14401475

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_9 NA coding upstream 20820 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 22535 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 23290 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 24986 14367708 ~ 14376408 (+)
galca LOC108258153 coding upstream 34115 14357280 ~ 14367279 (+)
papola papola coding downstream 2142 14403617 ~ 14423172 (+)
reps1 reps1,LOC107727647 coding downstream 195716 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 244158 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 295806 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 436469 14837944 ~ 14841301 (+)
trnas-gcu_21 NA non-coding upstream 2015 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 3462 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 4168 14397145 ~ 14397226 (+)
G295597 NA non-coding upstream 141404 14259536 ~ 14259990 (+)
G295590 NA non-coding upstream 163685 14237487 ~ 14237709 (+)
G295766 NA non-coding downstream 155254 14556729 ~ 14574795 (+)
G295787 NA non-coding downstream 225627 14627102 ~ 14631160 (+)
G295818 NA non-coding downstream 262618 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 264057 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 316810 14718285 ~ 14719968 (+)
trnas-gcu_16 NA other upstream 13837 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 15889 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 17007 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 18642 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 96703 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 722292 15123767 ~ 15189612 (+)
G296138 NA other downstream 822171 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1764923 16166398 ~ 16180232 (+)
G296562 NA other downstream 1912788 16314263 ~ 16315126 (+)
G296825 NA other downstream 2195675 16597150 ~ 16597787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10167646_10169639 NA coding CI01000304 null 10166187 ~ 10169639 (-)
rainbow trout (Oncorhynchus mykiss) trnas-gcu-266 NA coding NC_048593.1 CM023247.2 34546304 ~ 34546385 (-)
eurasian perch (Perca fluviatilis) trnas-gcu_19 NA coding NC_053131.1 CM020928.1 25076783 ~ 25076864 (+)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_6 NA coding NC_047611.1 CM018557.1 1097798 ~ 1097879 (-)
tiger barb (Puntius tetrazona) trnas-gcu_111 NA coding NW_025048651.1 JAEQBD010000996.1 133530 ~ 133611 (-)
tiger barb (Puntius tetrazona) trnaa-cgc_15 NA coding NC_056704.1 CM032073.1 13441990 ~ 13442061 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_6 NA misc NC_035917.1 CM008320.1 14091509 ~ 14091590 (-)