trnas-gcu_9


Basic Information

Item Value
gene id trnas-gcu_9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14380493 ~ 14380574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_9
GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_9 True 82 tRNA 0.59 1 14380493 14380574

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_8 NA coding upstream 1634 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 2389 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 4085 14367708 ~ 14376408 (+)
galca LOC108258153 coding upstream 13214 14357280 ~ 14367279 (+)
zdhhc14 zdhhc14,LOC108258056,LOC108444016,LOC107747944,LOC107679689,LOC107560202,LOC107742328 coding upstream 37781 14311216 ~ 14342712 (+)
papola papola coding downstream 23043 14403617 ~ 14423172 (+)
reps1 reps1,LOC107727647 coding downstream 216617 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 265059 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 316707 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 457370 14837944 ~ 14841301 (+)
G295597 NA non-coding upstream 120503 14259536 ~ 14259990 (+)
G295590 NA non-coding upstream 142784 14237487 ~ 14237709 (+)
G295333 NA non-coding upstream 363867 14016393 ~ 14016626 (+)
G295315 NA non-coding upstream 485696 13894449 ~ 13894797 (+)
G295269 NA non-coding upstream 652635 13727579 ~ 13727858 (+)
trnas-gcu_19 NA non-coding downstream 16571 14397145 ~ 14397226 (+)
trnas-gcu_20 NA non-coding downstream 17277 14397851 ~ 14397932 (+)
trnas-gcu_21 NA non-coding downstream 18724 14399298 ~ 14399379 (+)
trnas-gcu_22 NA non-coding downstream 20820 14401394 ~ 14401475 (+)
G295766 NA non-coding downstream 176155 14556729 ~ 14574795 (+)
arid1b arid1b,LOC108444017 other upstream 75802 14240519 ~ 14304691 (+)
LOC113532127 cebpzos other upstream 359743 14017524 ~ 14020750 (+)
trnaf-gaa_29 NA other upstream 825546 13554875 ~ 13554947 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other upstream 829265 13468727 ~ 13551228 (+)
LOC113532225 NA other upstream 1106250 13272082 ~ 13274243 (+)
trnas-gcu_11 NA other downstream 1964 14382538 ~ 14382752 (+)
trnas-gcu_13 NA other downstream 3732 14384306 ~ 14384387 (+)
trnas-gcu_14 NA other downstream 4850 14385424 ~ 14385505 (+)
trnas-gcu_16 NA other downstream 6902 14387476 ~ 14387557 (+)
trdn trdn,fbrsl1 other downstream 743193 15123767 ~ 15189612 (+)

Expression


Co-expression Network