trnav-cac_15


Basic Information

Item Value
gene id trnav-cac_15
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15766938 ~ 15767010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnav-cac_15
gtttctgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-cac_15 True 73 tRNA 0.53 1 15766938 15767010

Neighbor

gene id symbol gene type direction distance location
trnad-guc_27 NA coding upstream 147 15766720 ~ 15766791 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding upstream 4755 15652167 ~ 15762183 (+)
tbc1d32 tbc1d32,LOC107580719 coding upstream 209589 15506859 ~ 15557349 (+)
LOC113532226 LOC108257938 coding upstream 279541 15485091 ~ 15487397 (+)
trnaa-cgc_8 NA coding upstream 430682 15336184 ~ 15336256 (+)
trnav-cac_18 NA coding downstream 4687 15771697 ~ 15771769 (+)
trnad-guc_30 NA coding downstream 7814 15774824 ~ 15774895 (+)
trnav-cac_20 NA coding downstream 8032 15775042 ~ 15775114 (+)
fam184a fam184a,LOC107678849,LOC107697135 coding downstream 181588 15948598 ~ 16067641 (+)
mcm9 mcm9,LOC107549683 coding downstream 302694 16069704 ~ 16094093 (+)
G296348 NA non-coding upstream 3821 15707719 ~ 15763117 (+)
G296358 NA non-coding upstream 44492 15721671 ~ 15722446 (+)
G296340 NA non-coding upstream 185755 15580915 ~ 15581183 (+)
G296334 NA non-coding upstream 208090 15558629 ~ 15558848 (+)
G296247 NA non-coding upstream 265111 15456282 ~ 15501827 (+)
LOC113532272 NA non-coding downstream 53344 15820354 ~ 15863193 (+)
G296459 NA non-coding downstream 345384 16112394 ~ 16113288 (+)
G296428 slc35f1,LOC107727669,LOC107697151,LOC107743307,LOC107678858 non-coding downstream 371189 16138199 ~ 16185347 (+)
G296465 NA non-coding downstream 376049 16143059 ~ 16333438 (+)
G296429 NA non-coding downstream 384600 16151610 ~ 16165844 (+)
G296138 NA other upstream 461538 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 577326 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1379381 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1381433 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1382551 14384306 ~ 14384387 (+)
G296430 LOC108257881,LOC107603058 other downstream 399388 16166398 ~ 16180232 (+)
G296562 NA other downstream 547253 16314263 ~ 16315126 (+)
G296825 NA other downstream 830140 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 834694 16601704 ~ 16618438 (+)
afdna afdn other downstream 913086 16680096 ~ 16807291 (+)

Expression


Co-expression Network